Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1508.8 806 100.0
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1492.2 822 97.6
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1214.5 823 79.5
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1196.8 787 82.3
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1171.8 823 76.9
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1155.2 822 74.5
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 0.0e+00 1152.9 824 75.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1146.3 823 74.6
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1125.9 859 71.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1120.5 820 74.0
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1120.5 823 73.3
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1117.8 823 73.1
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1115.9 823 73.6
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1105.9 818 73.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1105.1 845 71.2
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1104.0 822 71.9
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 822 72.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1100.9 821 72.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1097.0 821 72.6
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1096.6 821 72.5
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1095.1 821 72.5
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1090.9 820 71.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1090.5 822 70.6
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1089.3 821 71.4
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1088.9 822 70.4
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 0.0e+00 1088.6 757 77.1
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1088.6 820 71.3
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 822 70.7
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1085.1 816 71.4
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1085.1 824 71.6
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 822 71.0
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1081.6 823 71.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 0.0e+00 1079.3 830 71.1
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1076.2 823 71.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.2e-310 1067.8 829 69.4
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 4.6e-309 1064.3 820 70.4
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.3e-308 1062.8 822 71.0
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 2.3e-308 1062.0 821 69.9
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.9e-308 1061.2 823 70.2
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 5.1e-308 1060.8 844 69.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 7.4e-307 1057.0 834 69.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.6e-306 1055.8 825 68.7
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.1e-306 1055.4 821 70.6
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 9.0e-305 1050.0 822 69.7
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 9.0e-305 1050.0 789 72.8
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 7.1e-302 1040.4 849 68.2
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 9.3e-302 1040.0 823 67.9
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 9.3e-302 1040.0 758 74.5
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.8e-300 1035.8 818 69.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-299 1033.1 824 68.2
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.5e-299 1032.7 824 69.5
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 823 67.9
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 3.7e-298 1028.1 821 68.8
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 821 68.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 818 67.4
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 5.5e-294 1014.2 820 67.9
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 5.5e-294 1014.2 821 67.2
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 7.1e-294 1013.8 818 66.5
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.6e-293 1012.7 818 66.9
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 6.0e-293 1010.7 826 67.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.8e-292 1009.2 821 66.3
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.3e-292 1008.8 823 67.8
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 9.7e-291 1003.4 821 66.9
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.2e-288 996.5 897 63.2
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.5e-287 990.3 815 66.0
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.4e-286 989.6 821 66.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 7.9e-285 983.8 821 66.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.9e-284 981.5 922 60.7
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.1e-283 979.9 821 64.3
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.1e-283 979.9 816 66.1
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 4.3e-283 978.0 820 65.6
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 7.4e-283 977.2 821 64.3
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.4e-281 973.0 821 64.4
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.1e-281 971.8 821 63.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.2e-280 969.9 821 64.2
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.0e-280 969.1 822 64.4
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 5.9e-280 967.6 832 64.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.8e-279 964.9 821 63.8
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.4e-278 963.0 821 63.7
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.2e-277 959.9 760 69.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 7.9e-277 957.2 826 64.8
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 3.9e-276 954.9 861 62.6
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.1e-275 953.4 821 63.3
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.5e-275 953.0 821 63.8
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 9.7e-275 950.3 837 62.7
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.1e-273 946.8 822 64.0
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.8e-273 946.0 864 61.5
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 7.2e-254 880.9 803 60.9
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.4e-249 866.7 592 79.4
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 4.5e-248 861.7 832 57.7
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 8.6e-247 857.4 825 57.1
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.8e-244 849.7 805 59.5
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.3e-238 828.9 700 65.6
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 5.6e-230 801.6 811 58.7
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.8e-229 799.3 867 53.7
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 2.6e-219 766.1 668 64.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 7.2e-177 625.2 626 58.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.4e-164 583.6 408 77.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.3e-162 577.8 839 42.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 7.9e-160 568.5 801 44.4
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.0e-159 568.2 545 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 6.3e-157 558.9 770 44.0
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.2e-153 546.2 491 61.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 5.9e-139 499.2 860 38.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.9e-138 496.9 324 79.6
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.0e-138 496.1 377 68.4
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.4e-135 488.0 820 38.8
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 1.6e-131 474.6 806 38.0
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.4e-116 424.1 271 81.5
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.6e-104 383.6 243 88.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.0e-102 377.9 261 72.4
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 8.1e-96 355.9 484 47.3
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 9.3e-92 342.4 275 62.2
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.7e-91 340.9 311 60.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.5e-61 240.0 147 86.4
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.1e-55 222.6 353 43.3
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 6.5e-53 213.4 811 25.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.9e-44 185.3 220 51.4
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.0e-42 179.5 116 80.2
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 4.8e-40 170.6 119 73.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.6e-35 155.6 825 22.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-33 149.1 91 79.1
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.5e-33 146.7 101 74.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.2e-32 145.2 216 44.4
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.2e-28 131.3 207 40.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.8e-26 125.6 70 95.7
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.1e-23 114.4 123 53.7
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 3.5e-22 111.3 67 79.1
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 9.5e-20 103.2 57 84.2
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 9.5e-20 103.2 57 84.2
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 9.2e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 2.3e-13 82.0 86 54.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-12 79.7 185 37.3
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.2e-11 76.3 69 62.3
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.7e-08 64.7 47 70.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-07 60.5 67 52.2


User provided reference genes

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