Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-113 411.4 203 100.0
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.7e-55 219.9 200 63.5
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-54 216.9 200 65.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.3e-42 177.2 186 59.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.9e-42 176.0 186 58.6
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.1e-41 174.1 194 55.7
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.6e-40 170.2 186 55.9
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.7e-40 169.5 200 54.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.6e-40 168.7 170 58.8
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.0e-40 168.3 187 56.7
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.9e-40 167.9 187 53.5
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.3e-39 166.4 184 56.5
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.5e-38 162.9 187 54.0
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.5e-38 162.9 187 52.4
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.6e-38 161.8 196 53.1
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 5.6e-38 161.8 198 51.5
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 9.6e-38 161.0 185 56.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.3e-37 160.6 190 51.1
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.7e-37 159.1 199 51.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 6.2e-37 158.3 206 51.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.1e-37 157.9 195 52.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.8e-36 156.8 190 51.6
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.8e-36 156.8 190 51.6
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.1e-36 156.0 206 50.5
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.0e-36 155.6 202 48.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 4.0e-36 155.6 186 52.2
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 4.0e-36 155.6 188 53.2
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 5.3e-36 155.2 189 53.4
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 6.9e-36 154.8 189 51.9
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.6e-35 152.9 192 52.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.4e-35 152.5 191 51.3
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.4e-35 152.5 199 49.7
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.3e-34 150.6 210 48.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.7e-34 150.2 194 49.5
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.2e-34 149.8 191 50.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 8.4e-34 147.9 190 48.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.1e-33 147.5 183 53.0
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.5e-33 146.4 214 45.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.5e-33 146.4 203 49.3
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 3.2e-33 146.0 190 50.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 5.5e-33 145.2 201 46.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 7.1e-33 144.8 207 45.9
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.2e-32 144.1 242 42.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.1e-32 143.3 198 47.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.1e-32 143.3 180 50.0
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.0e-32 141.7 210 45.7
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.0e-32 141.7 200 49.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.0e-31 141.0 171 53.2
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.0e-31 141.0 193 48.2
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.3e-31 139.8 210 45.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.1e-31 138.7 214 44.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 5.1e-31 138.7 209 45.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-31 138.3 187 47.6
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-30 137.5 204 48.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.5e-30 137.1 206 47.6
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.5e-30 137.1 191 47.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.9e-30 136.7 205 47.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.3e-30 136.0 192 48.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.3e-30 136.0 225 43.1
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 4.3e-30 135.6 205 44.9
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.3e-30 135.6 194 44.8
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 5.7e-30 135.2 210 42.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 7.4e-30 134.8 219 43.4
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 9.6e-30 134.4 193 44.0
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 9.6e-30 134.4 185 48.6
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.3e-29 134.0 192 47.9
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.3e-29 134.0 203 45.3
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.1e-29 133.3 205 46.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.8e-29 132.1 179 46.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 8.2e-29 131.3 208 44.7
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.1e-28 131.0 226 41.6
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.1e-28 131.0 207 45.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.1e-28 131.0 185 46.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.4e-28 129.8 217 42.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-28 129.8 208 42.3
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.1e-28 129.4 205 43.9
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.1e-28 129.4 194 45.9
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 9.0e-28 127.9 211 44.1
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 9.0e-28 127.9 197 44.2
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.5e-27 127.1 178 46.6
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-27 127.1 195 44.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.6e-27 126.3 237 40.9
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.6e-27 126.3 171 49.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.4e-27 125.9 181 45.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 7.6e-27 124.8 201 43.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 7.6e-27 124.8 191 44.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.3e-26 124.0 195 42.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.8e-26 122.5 189 43.4
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.8e-26 122.5 192 42.7
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 5.0e-26 122.1 201 43.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 5.0e-26 122.1 240 40.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 5.0e-26 122.1 198 44.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 8.4e-26 121.3 194 42.3
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-25 119.8 200 42.5
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.2e-25 119.4 218 39.4
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-25 119.4 198 41.4
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-25 119.0 200 42.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.5e-25 118.6 195 42.1
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 5.5e-25 118.6 188 44.1
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.2e-24 117.5 241 39.4
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.2e-24 117.5 233 39.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-24 117.1 182 42.3
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-24 117.1 196 42.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-24 117.1 139 48.9
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.7e-24 116.3 229 37.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-24 115.9 205 40.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.5e-24 115.9 205 40.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 4.6e-24 115.5 188 43.6
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.6e-24 115.5 188 43.6
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.6e-24 115.5 199 42.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.6e-24 115.5 218 40.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-24 115.2 180 43.9
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 6.1e-24 115.2 180 43.9
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.9e-24 114.8 190 43.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.0e-23 114.4 197 41.1
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-23 114.4 188 44.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-23 114.0 216 38.4
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-23 113.6 188 43.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.8e-23 113.6 199 41.7
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.3e-23 113.2 209 41.1
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-23 112.8 206 41.3
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 3.0e-23 112.8 214 40.7
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 3.9e-23 112.5 188 42.6
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.1e-23 112.1 216 38.4
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-23 111.7 183 42.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 8.7e-23 111.3 214 39.7
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.5e-22 110.5 201 41.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.7e-22 107.8 195 41.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 9.7e-22 107.8 212 38.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.8e-21 106.3 186 40.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.8e-21 106.3 213 39.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.7e-21 105.9 184 40.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 6.3e-21 105.1 187 40.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 8.2e-21 104.8 184 41.3
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.2e-21 104.8 137 45.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 8.2e-21 104.8 175 40.6
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-20 104.0 182 39.0
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.8e-20 103.6 193 37.8
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-20 102.8 182 40.1
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.1e-20 102.4 190 40.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 4.1e-20 102.4 214 39.3
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 5.3e-20 102.1 195 40.5
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 6.9e-20 101.7 218 36.7
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-19 100.5 182 39.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 4.5e-19 99.0 182 38.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-19 99.0 182 38.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 4.5e-19 99.0 182 38.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 7.7e-19 98.2 189 39.7
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.3e-18 97.4 184 40.2
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-18 97.4 177 39.0
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-18 97.1 120 44.2
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.7e-18 97.1 181 39.2
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 5.0e-18 95.5 208 37.5
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.7e-16 89.7 184 38.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.0e-15 87.8 105 51.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.3e-14 82.8 221 33.9
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.8e-13 79.0 222 28.8
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-12 77.8 117 40.2
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-12 77.8 117 40.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.1e-12 77.8 204 36.3
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-12 77.4 204 36.3
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.3e-12 75.5 117 38.5
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-12 75.5 117 38.5
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.5e-11 73.9 204 35.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.1e-08 63.5 217 30.9
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.6e-08 62.8 106 40.6
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.0e-07 61.2 117 34.2
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.0e-07 61.2 131 32.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.4e-07 60.8 176 32.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-07 60.8 224 28.6
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 3.0e-07 59.7 104 35.6
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.8e-07 58.2 141 31.2
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.1e-06 57.8 142 30.3
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.5e-06 57.4 117 32.5
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 1.5e-06 57.4 184 25.5


User provided reference genes

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