Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.1e-44 183.0 93 100.0
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 4.0e-31 137.9 97 72.2
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 5.1e-26 120.9 100 63.0
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 5.6e-25 117.5 101 61.4
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 7.3e-25 117.1 101 62.4
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.2e-24 116.3 98 63.3
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.6e-24 115.9 98 62.2
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.8e-24 115.2 93 66.7
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 8.1e-24 113.6 94 64.9
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 8.1e-24 113.6 102 62.7
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.8e-23 112.5 94 63.8
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.3e-23 112.1 100 60.0
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 8.9e-23 110.2 103 63.1
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.2e-22 109.8 104 57.7
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.2e-22 109.8 102 56.9
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.5e-22 109.4 100 62.0
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 2.6e-22 108.6 96 59.4
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.6e-22 108.6 102 56.9
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.6e-22 108.6 98 61.2
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 3.4e-22 108.2 96 62.5
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 9.9e-22 106.7 102 55.9
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 9.9e-22 106.7 96 61.5
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 1.3e-21 106.3 106 58.5
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 1.7e-21 105.9 98 63.3
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.7e-21 105.9 93 59.1
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.2e-21 105.5 98 63.3
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 2.2e-21 105.5 100 60.0
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 2.9e-21 105.1 96 60.4
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 2.9e-21 105.1 105 57.1
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 2.9e-21 105.1 101 57.4
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 2.9e-21 105.1 93 61.3
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 4.9e-21 104.4 73 69.9
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.4e-20 102.8 98 60.2
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.9e-20 102.4 101 55.4
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 1.9e-20 102.4 97 56.7
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 2.4e-20 102.1 106 57.5
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 2.4e-20 102.1 106 53.8
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 3.2e-20 101.7 97 60.8
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 4.1e-20 101.3 74 70.3
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 7.1e-20 100.5 93 55.9
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 9.2e-20 100.1 96 57.3
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 9.2e-20 100.1 109 53.2
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 2.7e-19 98.6 100 56.0
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 4.6e-19 97.8 101 54.5
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 6.0e-19 97.4 104 51.9
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 7.8e-19 97.1 105 54.3
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.0e-18 96.7 102 53.9
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-18 96.3 104 50.0
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-18 96.3 104 50.0
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.7e-18 95.9 81 65.4
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.3e-18 95.5 105 49.5
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.1e-17 93.2 105 48.6
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-17 93.2 105 48.6
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.5e-17 92.8 105 53.3
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.5e-17 92.8 102 53.9
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 3.3e-17 91.7 105 54.3
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 4.3e-17 91.3 59 71.2
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 5.6e-17 90.9 79 62.0
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 5.6e-17 90.9 103 51.5
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 9.6e-17 90.1 65 63.1
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 9.6e-17 90.1 86 59.3
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.2e-16 89.7 105 52.4
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.2e-16 89.7 105 52.4
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.1e-16 89.0 105 52.4
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 8.1e-16 87.0 93 50.5
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 2.4e-15 85.5 72 58.3
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.1e-15 85.1 106 48.1
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 4.0e-15 84.7 93 50.5
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 4.0e-15 84.7 73 57.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 8.9e-15 83.6 93 46.2
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.5e-14 82.8 69 59.4
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.6e-14 82.0 59 72.9
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.6e-14 82.0 62 69.4
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.6e-14 82.0 93 46.2
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 3.4e-14 81.6 68 57.4
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 5.8e-14 80.9 59 71.2
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 5.8e-14 80.9 59 71.2
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 9.9e-14 80.1 63 61.9
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.2e-13 79.0 46 73.9
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 2.9e-13 78.6 69 58.0
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 2.9e-13 78.6 69 58.0
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 2.9e-13 78.6 111 44.1
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.4e-13 77.4 53 62.3
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 6.4e-13 77.4 73 54.8
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.4e-12 75.5 89 48.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 3.2e-12 75.1 60 56.7
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.2e-12 74.7 105 45.7
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 9.3e-12 73.6 67 55.2
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.6e-11 72.8 51 62.7
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 2.1e-11 72.4 74 51.4
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.1e-11 72.4 81 48.1
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 3.9e-10 68.2 46 67.4
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 1.5e-09 66.2 42 64.3
Gohir.D13G071750 Gossypium hirsutum HOM05D061539 ORTHO05D009484 1.4e-07 59.7 92 38.0
Gorai.013G082200 Gossypium raimondii HOM05D061539 ORTHO05D009484 7.6e-06 53.9 87 37.9


User provided reference genes

Program Settings