Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.0e-151 537.7 271 100.0
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.7e-111 404.4 257 81.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-108 396.4 257 78.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.2e-106 389.4 257 79.4
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 6.5e-106 387.9 263 74.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.5e-102 375.9 257 76.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.5e-99 366.7 313 64.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.6e-99 365.9 255 73.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.2e-97 359.0 359 57.7
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 4.3e-94 348.6 263 68.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 4.3e-94 348.6 263 68.1
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 5.7e-94 348.2 265 67.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 7.4e-94 347.8 259 69.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 6.3e-93 344.7 295 63.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.7e-91 337.8 259 66.4
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.0e-90 337.4 265 65.7
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.9e-90 335.9 374 53.7
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 7.2e-89 331.3 265 66.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.1e-88 328.2 261 64.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.4e-87 327.0 252 66.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.9e-87 325.5 261 65.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.3e-86 322.4 264 64.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.7e-86 321.6 255 65.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 9.7e-86 320.9 259 64.1
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-85 320.1 264 63.3
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.8e-85 318.5 255 65.1
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.2e-85 317.8 264 63.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 3.1e-84 315.8 255 65.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.0e-83 313.2 265 63.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.4e-83 312.4 204 79.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.7e-82 310.1 258 62.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.2e-81 305.8 268 60.1
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.1e-80 303.1 261 64.4
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.7e-80 302.8 258 60.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.6e-80 302.4 247 64.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.4e-79 300.4 259 62.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.0e-79 299.3 261 60.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.6e-78 296.2 258 59.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 7.4e-78 294.7 257 64.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-77 293.9 310 53.2
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-77 293.9 310 53.2
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.3e-77 291.6 247 61.9
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 4.1e-76 288.9 258 60.1
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.3e-76 288.5 247 61.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 7.0e-76 288.1 226 68.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 9.1e-76 287.7 259 59.5
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.0e-75 286.6 260 63.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.0e-75 286.6 261 59.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.5e-75 285.8 279 56.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.5e-75 285.8 257 59.9
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 6.5e-74 281.6 257 57.6
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.1e-73 280.8 256 59.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.1e-72 276.6 258 59.7
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.1e-72 276.6 269 55.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 5.2e-71 271.9 270 56.7
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 5.2e-71 271.9 234 62.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 6.7e-71 271.6 261 58.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.8e-71 271.2 255 58.0
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.6e-70 269.6 259 58.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.3e-70 269.2 234 62.4
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.2e-69 266.5 234 61.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.3e-69 265.0 272 60.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.4e-68 263.8 202 69.3
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.8e-68 263.5 214 66.8
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.4e-68 263.1 268 51.9
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 5.9e-67 258.5 258 53.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.0e-66 257.7 196 67.9
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.9e-65 253.4 257 56.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.9e-65 253.4 257 56.0
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 9.4e-65 251.1 220 60.9
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.5e-62 243.8 220 60.5
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 9.8e-62 241.1 265 53.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.2e-61 240.0 273 50.5
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.5e-57 226.5 264 48.1
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 9.5e-57 224.6 229 58.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.1e-56 223.4 158 70.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.8e-56 223.0 205 59.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.6e-56 222.6 265 48.3
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.8e-55 220.3 256 51.2
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.3e-55 219.9 270 48.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.2e-54 217.6 268 49.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.2e-54 217.6 268 49.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.0e-54 216.9 266 48.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-54 216.1 271 48.0
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-54 216.1 226 52.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.4e-54 215.7 268 49.3
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.8e-53 213.0 226 56.6
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 4.9e-53 212.2 268 48.9
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.4e-52 210.7 267 48.3
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.8e-52 210.3 254 48.4
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.4e-52 209.9 245 45.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 9.2e-52 208.0 276 44.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.6e-51 207.2 264 47.7
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.5e-51 205.7 260 47.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 7.8e-51 204.9 298 45.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.5e-49 200.7 165 63.0
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.9e-49 200.3 299 44.1
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.6e-48 197.2 264 46.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.8e-48 196.4 275 45.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 8.0e-48 194.9 182 62.6
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 8.9e-47 191.4 250 46.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 8.9e-47 191.4 231 45.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.5e-46 190.7 329 39.2
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.2e-45 186.8 362 35.9
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.2e-45 186.8 259 44.8
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.4e-44 183.3 269 44.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.2e-44 183.0 282 41.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 7.0e-44 181.8 285 44.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 9.2e-44 181.4 260 45.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.3e-42 176.8 258 44.2
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.0e-42 176.4 274 41.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-41 173.7 258 44.2
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.5e-41 173.3 302 40.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.6e-41 172.2 207 51.2
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 6.2e-40 168.7 162 58.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.8e-39 167.2 269 40.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.6e-38 163.3 277 38.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.7e-37 160.6 216 46.8
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.1e-36 157.9 246 41.5
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-36 157.1 149 57.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.2e-35 154.5 272 39.0
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.6e-35 154.1 275 40.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.7e-34 150.6 255 40.8
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.9e-33 147.1 304 31.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.0e-31 139.4 272 35.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.7e-29 132.9 270 38.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.1e-28 131.3 208 42.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.1e-28 129.4 203 41.4
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.1e-28 128.6 216 40.3
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.6e-27 125.9 96 69.8
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.8e-27 125.2 208 41.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 3.0e-26 123.2 103 68.0
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 5.1e-26 122.5 209 38.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.1e-26 122.5 179 42.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.5e-25 120.2 204 40.2
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.5e-22 110.9 201 41.3
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 9.9e-22 108.2 129 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.2e-19 101.3 222 35.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 8.7e-18 95.1 83 60.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 5.6e-17 92.4 274 31.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.2e-11 74.7 110 44.5
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.7e-11 73.6 99 44.4
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.5e-09 67.0 69 49.3
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.3e-07 59.3 72 41.7
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 2.6e-06 57.0 57 54.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.6e-06 55.5 71 43.7


User provided reference genes

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