Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.4e-63 245.4 125 100.0
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 7.0e-55 217.2 125 92.0
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.9e-32 141.4 84 88.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.0e-21 105.5 83 67.5
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 6.2e-19 97.8 83 62.7
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.2e-16 89.4 83 56.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 8.3e-16 87.4 86 58.1
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.4e-15 86.7 84 57.1
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.0e-15 84.3 88 52.3
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.2e-14 83.6 81 56.8
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.1e-14 82.8 84 58.3
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.0e-13 80.5 86 57.0
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.0e-13 80.5 80 57.5
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.0e-13 79.0 80 55.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.6e-13 77.8 86 48.8
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 8.6e-13 77.4 80 53.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.3e-12 75.5 83 53.0
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.6e-12 74.7 73 57.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 7.3e-12 74.3 83 53.0
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.8e-11 72.4 64 57.8
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.1e-10 70.5 83 55.4
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 3.1e-10 68.9 83 48.2
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 8.9e-10 67.4 78 48.7
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.2e-09 67.0 96 47.9
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.2e-09 67.0 96 47.9
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.0e-09 66.2 81 50.6
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 4.4e-09 65.1 83 47.0
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 9.9e-09 63.9 83 44.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.3e-08 63.5 88 43.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.2e-08 62.8 80 47.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 2.2e-08 62.8 84 51.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.9e-08 62.4 80 46.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 6.4e-08 61.2 96 45.8
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.4e-08 61.2 81 44.4
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 8.3e-08 60.8 80 46.2
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 8.3e-08 60.8 60 51.7
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 8.3e-08 60.8 96 45.8
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 8.3e-08 60.8 83 50.6
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 8.3e-08 60.8 83 48.2
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.4e-07 60.1 87 44.8
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.4e-07 60.1 60 53.3
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.2e-07 58.9 80 46.2
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 7.1e-07 57.8 84 46.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-06 57.0 68 51.5
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 1.6e-06 56.6 93 43.0
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-06 56.2 84 46.4
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.1e-06 56.2 84 46.4
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.1e-06 56.2 83 41.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.7e-06 55.8 88 45.5
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 3.5e-06 55.5 84 46.4
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 4.6e-06 55.1 83 42.2
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 4.6e-06 55.1 84 47.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 7.8e-06 54.3 85 42.4
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 7.8e-06 54.3 80 47.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 7.8e-06 54.3 88 44.3


User provided reference genes

Program Settings