Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 5.1e-47 191.4 157 100.0
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 6.5e-18 94.7 114 54.4
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 7.5e-14 81.3 114 46.5
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 1.3e-13 80.5 114 45.6
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 2.2e-13 79.7 114 45.6
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 2.8e-13 79.3 114 45.6
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 2.8e-13 79.3 114 45.6
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.7e-13 79.0 118 43.2
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 3.7e-13 79.0 114 45.6
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 6.3e-13 78.2 114 43.9
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 6.3e-13 78.2 114 43.9
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 6.3e-13 78.2 114 44.7
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 8.3e-13 77.8 114 45.6
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 1.4e-12 77.0 137 40.9
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 1.4e-12 77.0 114 44.7
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.8e-12 76.6 118 42.4
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 3.1e-12 75.9 114 43.9
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.4e-12 75.1 118 41.5
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 7.0e-12 74.7 114 42.1
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 7.0e-12 74.7 109 46.8
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 9.2e-12 74.3 114 42.1
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 1.2e-11 73.9 114 42.1
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 1.2e-11 73.9 109 45.9
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 2.0e-11 73.2 113 42.5
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 2.7e-11 72.8 114 43.9
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 2.7e-11 72.8 114 41.2
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 2.7e-11 72.8 113 43.4
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.7e-11 72.8 112 42.0
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 2.7e-11 72.8 156 34.6
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 4.5e-11 72.0 144 36.8
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 4.5e-11 72.0 114 43.9
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.3e-10 70.5 118 42.4
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 1.3e-10 70.5 114 41.2
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 2.9e-10 69.3 114 51.8
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 3.8e-10 68.9 114 42.1
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 3.8e-10 68.9 113 41.6
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 6.6e-10 68.2 114 39.5
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 8.6e-10 67.8 114 42.1
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 8.6e-10 67.8 114 46.5
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 8.6e-10 67.8 118 66.9
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 8.6e-10 67.8 118 66.9
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 8.6e-10 67.8 109 43.1
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.1e-09 67.4 118 41.5
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 1.1e-09 67.4 114 38.6
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 1.1e-09 67.4 109 41.3
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 1.5e-09 67.0 114 40.4
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 1.5e-09 67.0 109 43.1
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 1.9e-09 66.6 114 40.4
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 2.5e-09 66.2 114 53.5
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 4.3e-09 65.5 109 38.5
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 4.3e-09 65.5 109 42.2
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 7.3e-09 64.7 147 34.0
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 7.3e-09 64.7 114 37.7
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 1.2e-08 63.9 147 45.6
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 1.6e-08 63.5 114 40.4
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 1.6e-08 63.5 114 57.0
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 2.8e-08 62.8 114 36.0
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 2.8e-08 62.8 114 36.0
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 5.2e-07 58.5 114 41.2
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 3.4e-06 55.8 175 30.3
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 3.4e-06 55.8 40 75.0


User provided reference genes

Program Settings