Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023538 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 5.0e-30 133.7 62 100.0
CSS0033615 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 3.6e-28 127.5 62 93.5
CSS0047080 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 4.7e-28 127.1 62 93.5
Oeu026013.1 Olea europaea HOM05D000770 ORTHO05D000586 1.7e-17 92.0 66 65.2
Rhsim02G0128500 Rhododendron simsii HOM05D000770 ORTHO05D000586 1.7e-17 92.0 67 65.7
Hma1.2p1_0881F.1_g232070 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 6.4e-17 90.1 66 63.6
TAR626G1074 Trochodendron aralioides HOM05D000770 ORTHO05D000586 8.3e-17 89.7 66 65.2
TWI38G1179 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 2.7e-15 84.7 66 59.1
Nitab4.5_0002158g0070 Nicotiana tabacum HOM05D000770 ORTHO05D000586 4.6e-15 84.0 66 56.1
Duzib235G1319 Durio zibethinus HOM05D000770 ORTHO05D000586 6.0e-15 83.6 66 59.1
Peaxi162Scf00461g00017 Petunia axillaris HOM05D000770 ORTHO05D000586 6.0e-15 83.6 57 63.2
Thecc.06G189500 Theobroma cacao HOM05D000770 ORTHO05D000586 7.8e-15 83.2 66 59.1
GSVIVG01002062001 Vitis vinifera HOM05D000770 ORTHO05D000586 7.8e-15 83.2 66 57.6
ECA236G1786 Erigeron canadensis HOM05D000770 ORTHO05D000586 1.0e-14 82.8 56 62.5
Migut.M01150 Erythranthe guttata HOM05D000770 ORTHO05D000586 1.0e-14 82.8 58 67.2
Peaxi162Scf00947g00118 Petunia axillaris HOM05D000770 ORTHO05D000586 1.0e-14 82.8 66 54.5
COL.COLO4_31492 Corchorus olitorius HOM05D000770 ORTHO05D000586 6.6e-14 80.1 66 56.1
Dinv40546 Davidia involucrata HOM05D000770 ORTHO05D000586 6.6e-14 80.1 56 64.3
CAN.G1164.17 Capsicum annuum HOM05D000770 ORTHO05D000586 8.6e-14 79.7 63 52.4
Gohir.D10G025700 Gossypium hirsutum HOM05D000770 ORTHO05D000586 1.1e-13 79.3 66 53.0
Gorai.011G027000 Gossypium raimondii HOM05D000770 ORTHO05D000586 1.1e-13 79.3 66 53.0
Solyc02g078380.3 Solanum lycopersicum HOM05D000770 ORTHO05D000586 1.1e-13 79.3 63 52.4
Sopen02g023240 Solanum pennellii HOM05D000770 ORTHO05D000586 1.1e-13 79.3 63 52.4
PGSC0003DMG400022388 Solanum tuberosum HOM05D000770 ORTHO05D000586 1.1e-13 79.3 63 52.4
Gohir.A10G025000 Gossypium hirsutum HOM05D000770 ORTHO05D000586 1.5e-13 79.0 66 53.0
Atru.chr10.1902 Acer truncatum HOM05D000770 ORTHO05D000586 2.5e-13 78.2 66 54.5
Lalb_Chr20g0121941 Lupinus albus HOM05D000770 ORTHO05D000586 9.5e-13 76.3 66 53.0
Oeu050842.1 Olea europaea HOM05D000770 ORTHO05D000586 2.1e-12 75.1 66 50.0
Aqoxy1G02514 Aquilegia oxysepala HOM05D000770 ORTHO05D000586 2.8e-12 74.7 57 59.6
CiPaw.09G058500 Carya illinoinensis HOM05D000770 ORTHO05D000586 2.8e-12 74.7 56 60.7
QL05p039948 Quercus lobata HOM05D000770 ORTHO05D000586 2.8e-12 74.7 65 55.4
arahy.Tifrunner.gnm1.ann1.KPLK3V Arachis hypogaea HOM05D000770 ORTHO05D000586 3.6e-12 74.3 66 53.0
Glyma.15G073100 Glycine max HOM05D000770 ORTHO05D000586 3.6e-12 74.3 67 52.2
arahy.Tifrunner.gnm1.ann1.I6EE1A Arachis hypogaea HOM05D000770 ORTHO05D000586 4.7e-12 73.9 65 52.3
Oeu005075.2 Olea europaea HOM05D002535 ORTHO05D008858 4.7e-12 73.9 54 63.0
Cfa000431 Carpinus fangiana HOM05D002535 ORTHO05D008858 6.2e-12 73.6 56 60.7
Lalb_Chr15g0089861 Lupinus albus HOM05D000770 ORTHO05D000586 6.2e-12 73.6 66 51.5
Haze_06485 Corylus avellana HOM05D002535 ORTHO05D008858 8.1e-12 73.2 57 59.6
Phvul.006G186600 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 1.1e-11 72.8 68 51.5
VMungo0540G1272 Vigna mungo HOM05D000770 ORTHO05D000586 1.1e-11 72.8 67 50.7
MBI18_g16994_MAGBIO Magnolia biondii HOM05D000770 ORTHO05D000586 2.3e-11 71.6 60 53.3
Prupe.4G045300 Prunus persica HOM05D000770 ORTHO05D000586 2.3e-11 71.6 56 60.7
RcHm_v2.0_Chr5g0008201 Rosa chinensis HOM05D000770 ORTHO05D000586 3.1e-11 71.2 62 54.8
Ciclev10018115m.g Citrus clementina HOM05D000770 ORTHO05D000586 4.0e-11 70.9 66 51.5
MD00G1095400 Malus domestica HOM05D000770 ORTHO05D000586 1.2e-10 69.3 65 47.7
PSO675G7755 Papaver somniferum HOM05D000770 ORTHO05D000586 1.2e-10 69.3 65 50.8
HanXRQChr04g0124091 Helianthus annuus HOM05D000770 ORTHO05D000586 4.4e-10 67.4 59 59.3
CANSAT35G0325 Cannabis sativa HOM05D000770 ORTHO05D000586 9.8e-10 66.2 57 56.1
CDE08G0289 Ceratophyllum demersum HOM05D000770 ORTHO05D000586 1.7e-09 65.5 46 60.9
Lj2A287T52 Lonicera japonica HOM05D000770 ORTHO05D000586 1.7e-09 65.5 56 55.4
Potri.011G122100 Populus trichocarpa HOM05D000770 ORTHO05D000586 9.2e-08 59.7 48 52.1
Manes.15G085500 Manihot esculenta HOM05D000770 ORTHO05D000586 1.2e-07 59.3 48 52.1
Sabra16G0264700 Salix brachista HOM05D000770 ORTHO05D000586 1.2e-07 59.3 48 52.1
CSS0018801 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 1.6e-07 58.9 48 52.1
Duzib213G1072 Durio zibethinus HOM05D000770 ORTHO05D000586 1.6e-07 58.9 48 54.2
Gohir.D01G052900 Gossypium hirsutum HOM05D000770 ORTHO05D000586 1.6e-07 58.9 48 54.2
Gorai.002G072700 Gossypium raimondii HOM05D000770 ORTHO05D000586 1.6e-07 58.9 48 54.2
Potri.001G403000 Populus trichocarpa HOM05D000770 ORTHO05D000586 2.1e-07 58.5 48 50.0
Gohir.A01G065500 Gossypium hirsutum HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 52.1
Duzib268G1690 Durio zibethinus HOM05D000770 ORTHO05D000586 6.0e-07 57.0 48 52.1
Cpa.g.sc80.38 Carica papaya HOM05D000770 ORTHO05D000586 7.8e-07 56.6 48 52.1
Peaxi162Scf00000g43013 Petunia axillaris HOM05D000770 ORTHO05D000586 7.8e-07 56.6 48 50.0
Aa31LG5G10070 Aethionema arabicum HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
EL10Ac4g08120 Beta vulgaris HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
BcaNung03025 Brassica carinata HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
A01p18620 Brassica napus HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
C01p23640 Brassica napus HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
BolC1t02307H Brassica oleracea HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
BraA01t01812Z Brassica rapa HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
Ciclev10009261m.g Citrus clementina HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 52.1
Migut.M00856 Erythranthe guttata HOM05D000770 ORTHO05D000586 1.0e-06 56.2 47 51.1
Nitab4.5_0009946g0020 Nicotiana tabacum HOM05D000770 ORTHO05D000586 1.0e-06 56.2 52 46.2
Sp7g25400 Schrenkiella parvula HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
THA.LOC104811858 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
TWI39G0499 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 52.1
Carub.0007s1340 Capsella rubella HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 50.0
MD03G1224100 Malus domestica HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 50.0
ECA234G2008 Erigeron canadensis HOM05D000770 ORTHO05D000586 1.7e-06 55.5 56 44.6
FvH4_3g20560 Fragaria vesca HOM05D000770 ORTHO05D000586 1.7e-06 55.5 52 48.1
FAN11G0564 Fragaria x ananassa HOM05D000770 ORTHO05D000586 1.7e-06 55.5 52 48.1
FAN16G1586 Fragaria x ananassa HOM05D000770 ORTHO05D000586 1.7e-06 55.5 52 48.1
Ah.06g183880 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
FAN21G2007 Fragaria x ananassa HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 50.0
FAN25G2120 Fragaria x ananassa HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 50.0
HanXRQChr16g0511221 Helianthus annuus HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
PGR083G2267 Punica granatum HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
Sabra11G0108100 Salix brachista HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
arahy.Tifrunner.gnm1.ann1.438HD4 Arachis hypogaea HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
MSTRG.6846 Avicennia marina HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 50.0
BcaC07g38281 Brassica carinata HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
A08p20480 Brassica napus HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
C08p10270 Brassica napus HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
BolC8t48705H Brassica oleracea HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
BraA08t34004Z Brassica rapa HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
CiPaw.11G173100 Carya illinoinensis HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
ClCG11G018200 Citrullus lanatus HOM05D000770 ORTHO05D000586 3.0e-06 54.7 47 48.9
Cc05_g12340 Coffea canephora HOM05D000770 ORTHO05D000586 3.0e-06 54.7 52 46.2
COL.COLO4_09431 Corchorus olitorius HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 52.1
MELO3C016712.2 Cucumis melo HOM05D000770 ORTHO05D000586 3.0e-06 54.7 47 48.9
CsaV3_4G033850 Cucumis sativus L. HOM05D000770 ORTHO05D000586 3.0e-06 54.7 47 48.9
Thhalv10026074m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
Lj1A848T58 Lonicera japonica HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 50.0
QL08p019765 Quercus lobata HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
Rhsim06G0196500 Rhododendron simsii HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
unitig_578.g15968 Utricularia gibba HOM05D000770 ORTHO05D000586 3.0e-06 54.7 47 48.9
AL7G25320 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 3.9e-06 54.3 48 47.9
AT4G27450 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 3.9e-06 54.3 48 47.9
CAN.G708.5 Capsicum annuum HOM05D000770 ORTHO05D000586 3.9e-06 54.3 48 45.8
Lj3g0019739 Lotus japonicus HOM05D000770 ORTHO05D000586 3.9e-06 54.3 47 48.9
Solyc12g013700.2 Solanum lycopersicum HOM05D000770 ORTHO05D000586 3.9e-06 54.3 52 44.2
Sopen12g007050 Solanum pennellii HOM05D000770 ORTHO05D000586 3.9e-06 54.3 52 44.2
SGA_v2.0_scaffold73G24294 Striga asiatica HOM05D000770 ORTHO05D000586 3.9e-06 54.3 47 48.9
TAR629G1270 Trochodendron aralioides HOM05D000770 ORTHO05D000586 3.9e-06 54.3 48 47.9
Atru.chr2.2735 Acer truncatum HOM05D000770 ORTHO05D000586 5.1e-06 53.9 48 47.9
CARHR235130 Cardamine hirsuta HOM05D000770 ORTHO05D000586 5.1e-06 53.9 48 47.9
ECA246G4115 Erigeron canadensis HOM05D000770 ORTHO05D000586 5.1e-06 53.9 48 47.9
MD11G1241900 Malus domestica HOM05D000770 ORTHO05D000586 5.1e-06 53.9 48 47.9
Prupe.4G185400 Prunus persica HOM05D000770 ORTHO05D000586 5.1e-06 53.9 48 47.9
Glyma.12G150500 Glycine max HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 48.9
HanXRQChr08g0234341 Helianthus annuus HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 47.9
Lsat_1_v5_gn_5_8421 Lactuca sativa HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 47.9
Lalb_Chr25g0286551 Lupinus albus HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
RcHm_v2.0_Chr5g0034571 Rosa chinensis HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 47.9
Hund22950 Selenicereus undatus HOM05D000770 ORTHO05D000586 6.6e-06 53.5 52 44.2
CANSAT56G1554 Cannabis sativa HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
Cfa020549 Carpinus fangiana HOM05D000770 ORTHO05D000586 8.6e-06 53.1 48 47.9
Dinv04322 Davidia involucrata HOM05D000770 ORTHO05D000586 8.6e-06 53.1 48 45.8
Hma1.2p1_0540F.1_g174660 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 8.6e-06 53.1 52 46.2
Medtr2g079670 Medicago truncatula HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 48.9
Phvul.005G083400 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
VMungo1080G0090 Vigna mungo HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8


User provided reference genes

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