Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 8.5e-87 323.6 154 100.0
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 4.0e-60 235.0 152 72.4
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.6e-53 211.8 157 67.5
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.4e-52 209.9 157 67.5
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 7.0e-49 197.6 146 64.4
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 3.4e-43 178.7 135 63.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.9e-41 172.9 134 62.7
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.0e-39 165.6 146 58.2
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 5.1e-39 164.9 146 54.8
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.2e-37 157.9 137 60.6
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.3e-36 156.0 145 51.7
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 3.1e-36 155.6 135 55.6
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 4.0e-36 155.2 132 54.5
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.8e-36 154.5 144 52.8
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.8e-36 154.5 144 52.8
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.5e-35 153.3 149 49.7
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.3e-34 150.2 142 51.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.3e-34 150.2 132 53.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 3.7e-34 148.7 133 54.1
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 7.1e-33 144.4 137 51.8
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 9.2e-33 144.1 141 52.5
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.1e-32 142.9 131 51.9
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.7e-32 142.5 147 46.9
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 7.8e-32 141.0 149 49.0
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.0e-31 140.6 147 46.3
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-31 139.4 152 44.1
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 3.9e-31 138.7 135 48.9
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.1e-31 138.3 147 46.3
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 8.6e-31 137.5 136 47.8
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.1e-30 137.1 140 50.0
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.5e-30 136.7 128 47.7
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 3.3e-30 135.6 135 46.7
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 4.3e-30 135.2 147 47.6
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 7.3e-30 134.4 136 50.7
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 9.6e-30 134.0 132 47.7
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 9.6e-30 134.0 132 47.7
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.2e-29 133.7 140 50.0
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.1e-29 132.9 151 46.4
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.1e-29 132.9 134 50.0
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 3.6e-29 132.1 134 49.3
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 8.1e-29 131.0 132 50.8
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.8e-28 129.8 135 48.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 2.4e-28 129.4 134 48.5
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 5.2e-28 128.3 132 48.5
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 5.2e-28 128.3 132 45.5
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 6.8e-28 127.9 137 48.9
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 6.8e-28 127.9 148 44.6
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 8.9e-28 127.5 125 49.6
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 8.9e-28 127.5 135 46.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-27 127.1 144 47.9
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 2.0e-27 126.3 136 48.5
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.0e-27 126.3 128 49.2
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.4e-27 125.6 141 44.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-27 125.2 130 50.8
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 4.4e-27 125.2 131 51.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 5.8e-27 124.8 133 48.9
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 5.8e-27 124.8 138 54.3
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 7.6e-27 124.4 134 51.5
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.6e-27 124.4 130 50.8
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 9.9e-27 124.0 124 52.4
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.7e-26 123.2 135 50.4
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 2.2e-26 122.9 132 47.7
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 2.9e-26 122.5 139 44.6
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 3.8e-26 122.1 153 41.2
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.9e-26 121.7 128 49.2
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 8.4e-26 120.9 132 50.8
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.1e-25 120.6 136 47.1
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.1e-25 120.6 136 47.1
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.9e-25 119.8 126 50.0
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.2e-25 119.0 135 46.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.2e-25 119.0 135 46.7
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 4.2e-25 118.6 125 45.6
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.2e-24 117.1 153 40.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.1e-24 116.3 134 45.5
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.7e-24 115.9 137 44.5
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.5e-24 115.5 133 48.9
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 4.6e-24 115.2 139 48.2
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 4.6e-24 115.2 137 46.7
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 4.6e-24 115.2 154 40.3
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 6.0e-24 114.8 103 56.3
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.3e-23 113.6 125 49.6
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 3.0e-23 112.5 127 45.7
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.1e-23 111.7 125 47.2
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.6e-23 111.3 151 43.7
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 6.6e-23 111.3 117 47.9
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 8.7e-23 110.9 144 41.7
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.5e-22 109.4 135 39.3
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 3.3e-22 109.0 125 47.2
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.3e-22 108.6 132 43.2
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 5.6e-22 108.2 132 42.4
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.3e-22 107.8 121 44.6
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.1e-21 104.4 132 45.5
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 8.1e-21 104.4 107 51.4
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.1e-20 104.0 148 40.5
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-20 104.0 128 39.8
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-20 103.2 132 43.9
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.8e-20 103.2 137 43.1
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 4.0e-20 102.1 133 44.4
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 6.9e-20 101.3 126 45.2
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 1.2e-19 100.5 129 46.5
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 2.0e-19 99.8 125 45.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 3.4e-19 99.0 123 47.2
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 9.9e-19 97.4 134 40.3
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 9.9e-19 97.4 131 42.0
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.7e-18 96.7 97 47.4
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.2e-18 96.3 113 50.4
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.2e-18 96.3 100 44.0
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.2e-18 96.3 93 50.5
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 3.8e-18 95.5 127 47.2
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.9e-18 95.1 84 52.4
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-17 93.6 96 46.9
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.2e-17 92.4 88 53.4
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 5.4e-17 91.7 103 43.7
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 7.1e-17 91.3 96 45.8
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 9.3e-17 90.9 117 44.4
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 2.7e-16 89.4 123 36.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.6e-16 88.6 108 40.7
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.9e-16 87.8 128 39.8
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.7e-15 86.7 93 50.5
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-15 86.7 126 44.4
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.7e-15 86.7 126 44.4
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 2.3e-15 86.3 129 35.7
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.0e-15 85.9 139 40.3
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.9e-15 85.5 124 40.3
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.9e-15 85.5 139 40.3
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.9e-14 83.2 102 45.1
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 4.3e-14 82.0 101 42.6
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.3e-14 82.0 125 36.0
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 9.6e-14 80.9 107 43.9
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 9.6e-14 80.9 123 36.6
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.3e-13 80.5 107 43.9
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-12 77.4 76 50.0
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.2e-11 73.9 103 40.8
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 2.0e-11 73.2 113 35.4
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 5.8e-11 71.6 125 36.8
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 7.6e-11 71.2 113 36.3
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-10 70.1 100 40.0
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 2.9e-10 69.3 65 53.8
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.6e-08 63.5 118 31.4
Actinidia23830 Actinidia chinensis HOM05D000838 ORTHO05D000656 1.3e-07 60.5 99 38.4
Pp3c22_2550 Physcomitrium patens HOM05D000838 ORTHO05D000656 1.3e-07 60.5 74 37.8
CAN.G181.26 Capsicum annuum HOM05D000838 ORTHO05D000656 3.0e-07 59.3 113 34.5
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 3.9e-07 58.9 90 37.8
Solyc06g007530.2 Solanum lycopersicum HOM05D000838 ORTHO05D000656 5.1e-07 58.5 132 33.3
vmacro14653 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 5.1e-07 58.5 99 37.4
Nitab4.5_0003194g0040 Nicotiana tabacum HOM05D000838 ORTHO05D000656 6.7e-07 58.2 99 37.4
PGSC0003DMG400020648 Solanum tuberosum HOM05D000838 ORTHO05D000656 1.1e-06 57.4 113 34.5
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.5e-06 57.0 83 34.9
AUR62020516 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.9e-06 56.6 68 45.6
Sopen06g002440 Solanum pennellii HOM05D000838 ORTHO05D000656 1.9e-06 56.6 99 38.4
CANSAT54G1365 Cannabis sativa HOM05D000838 ORTHO05D000656 3.3e-06 55.8 99 36.4
Rhsim01G0244500 Rhododendron simsii HOM05D000838 ORTHO05D000656 3.3e-06 55.8 99 36.4
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.3e-06 55.8 60 46.7
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 4.3e-06 55.5 83 38.6
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 5.6e-06 55.1 122 32.0
TWI73G0729 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 5.6e-06 55.1 126 31.0
Phvul.008G244300 Phaseolus vulgaris HOM05D000838 ORTHO05D000656 7.4e-06 54.7 109 33.9
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 9.6e-06 54.3 96 36.5


User provided reference genes

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