Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.7e-234 813.9 496 100.0
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.7e-227 792.0 496 98.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.6e-137 493.0 459 65.4
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.1e-132 477.6 436 68.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 4.2e-127 459.1 461 61.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.1e-122 443.0 509 57.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.5e-121 440.7 451 63.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 5.8e-121 438.7 450 62.9
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.8e-120 436.0 483 57.6
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.1e-119 434.5 597 52.6
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.2e-119 432.6 453 60.5
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 2.1e-118 430.3 456 58.3
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 5.7e-116 422.2 473 56.9
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 7.4e-116 421.8 441 61.5
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.2e-113 414.5 454 58.8
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.2e-113 414.5 454 56.8
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 4.5e-113 412.5 435 59.3
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 5.9e-113 412.1 441 58.7
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.5e-111 406.8 441 56.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 9.3e-111 404.8 557 50.3
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 6.1e-110 402.1 455 57.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.8e-109 400.6 492 54.3
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.8e-109 400.6 479 56.4
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.1e-108 397.9 466 54.7
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.3e-108 396.4 456 56.8
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.7e-108 395.6 468 54.3
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.1e-106 391.3 432 58.1
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 6.9e-106 388.7 464 55.4
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.2e-105 387.9 440 56.8
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 3.4e-105 386.3 438 56.8
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.3e-104 384.4 466 53.6
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.9e-104 383.3 439 55.4
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 3.8e-104 382.9 469 54.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.2e-103 379.8 466 54.1
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 7.2e-103 378.6 537 49.2
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 5.1e-101 372.5 440 54.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 5.1e-101 372.5 453 54.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.5e-100 370.9 454 52.6
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 9.7e-100 368.2 452 54.4
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 4.8e-99 365.9 452 52.2
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 4.8e-99 365.9 437 55.6
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 8.2e-99 365.2 461 53.1
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.4e-97 359.8 450 53.3
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-96 358.2 456 52.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.0e-96 358.2 455 53.2
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 3.8e-96 356.3 454 53.1
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.5e-95 353.6 451 52.5
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 9.4e-95 351.7 399 59.9
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.9e-94 348.6 447 53.0
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.8e-93 347.4 384 58.6
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.1e-92 344.7 453 50.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.5e-92 344.4 458 51.7
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.8e-91 340.1 450 50.4
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.4e-90 337.0 450 50.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-89 334.3 450 49.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.5e-89 333.2 442 51.1
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.0e-88 331.6 476 48.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 2.9e-88 330.1 450 48.9
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 3.8e-88 329.7 434 53.2
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 9.4e-87 325.1 437 49.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.4e-87 325.1 438 51.6
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.1e-86 323.9 453 48.8
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.0e-84 317.4 352 59.4
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 4.4e-84 316.2 420 47.9
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 7.5e-84 315.5 432 50.7
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 9.7e-84 315.1 416 52.6
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.2e-83 313.9 433 49.2
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 2.8e-83 313.5 444 49.5
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.8e-83 312.8 440 48.9
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 4.8e-83 312.8 396 52.8
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.8e-82 310.8 449 49.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 7.0e-82 308.9 272 68.0
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 4.5e-81 306.2 443 48.1
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 7.7e-81 305.4 332 56.9
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.1e-79 301.6 435 50.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 9.4e-79 298.5 441 47.8
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.4e-77 294.7 439 45.6
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 4.0e-77 293.1 431 49.0
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 7.5e-76 288.9 455 44.8
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.1e-74 285.0 443 47.0
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.1e-74 285.0 474 44.5
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.5e-72 275.8 367 52.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 8.6e-72 275.4 470 44.7
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.1e-71 275.0 410 46.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.5e-71 273.9 455 45.1
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.6e-70 271.2 444 45.0
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 2.8e-70 270.4 446 45.1
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 3.6e-70 270.0 412 46.6
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.0e-69 266.9 434 44.7
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 6.8e-69 265.8 427 45.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.2e-68 265.0 446 43.7
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.0e-68 264.2 427 45.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.2e-67 260.8 458 41.7
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.2e-67 260.8 452 43.6
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-66 258.5 431 44.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.4e-66 258.1 433 44.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.4e-66 257.3 425 46.4
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 5.4e-66 256.1 446 42.4
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.2e-65 255.0 384 48.7
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.2e-65 255.0 423 46.1
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.0e-64 251.9 447 43.2
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 3.3e-63 246.9 453 41.5
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.6e-63 246.1 413 44.1
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.2e-62 245.0 467 40.3
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.0e-61 241.9 417 42.2
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 8.9e-61 238.8 433 42.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 6.4e-59 232.6 417 43.2
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.1e-58 229.9 451 41.5
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 4.1e-58 229.9 340 48.2
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.2e-57 228.4 445 40.9
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.5e-41 173.7 183 57.4
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.1e-38 164.5 367 40.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 9.2e-34 149.1 316 40.2
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.6e-33 148.3 139 61.2
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.0e-32 145.6 271 42.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 4.3e-31 140.2 119 61.3
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 3.6e-30 137.1 270 41.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.0e-28 131.3 267 39.3
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-28 130.6 98 70.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 9.9e-28 129.0 205 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.3e-27 128.6 483 29.2
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.2e-27 127.9 439 32.8
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-24 117.9 454 27.1
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 2.6e-20 104.4 454 28.9
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.7e-19 101.7 430 29.5
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 8.4e-19 99.4 430 28.6
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 7.1e-18 96.3 114 44.7
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.1e-18 96.3 333 30.6
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.0e-17 93.2 103 50.5
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.0e-16 90.9 84 61.9
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.9e-15 88.2 63 68.3
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.4e-13 81.3 63 65.1
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.6e-12 77.8 123 47.2
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.5e-12 77.0 64 64.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.6e-09 67.0 62 56.5
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 5.6e-07 60.1 67 55.2
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 2.8e-06 57.8 36 69.4
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 8.2e-06 56.2 374 27.8


User provided reference genes

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