Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023500 Camellia sinensis var. sinensis HOM05D004599 ORTHO05D005564 3.2e-46 188.0 89 100.0
Actinidia35930 Actinidia chinensis HOM05D004599 ORTHO05D005564 2.1e-21 105.5 58 84.5
Actinidia25094 Actinidia chinensis HOM05D004599 ORTHO05D005564 3.6e-21 104.8 58 81.0
Cc03_g06960 Coffea canephora HOM05D004599 ORTHO05D005564 1.8e-20 102.4 58 79.3
CiPaw.01G175100 Carya illinoinensis HOM05D004599 ORTHO05D005564 2.3e-20 102.1 60 78.3
Peaxi162Scf00125g01026 Petunia axillaris HOM05D004599 ORTHO05D005564 3.0e-20 101.7 58 79.3
Solyc09g091050.4 Solanum lycopersicum HOM05D004599 ORTHO05D005564 6.8e-20 100.5 58 81.0
Sopen09g034030 Solanum pennellii HOM05D004599 ORTHO05D005564 6.8e-20 100.5 58 81.0
Atru.chr4.1870 Acer truncatum HOM05D004599 ORTHO05D005564 8.8e-20 100.1 58 77.6
FvH4_4g05250 Fragaria vesca HOM05D004599 ORTHO05D005564 1.2e-19 99.8 58 75.9
FAN07G1323 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.2e-19 99.8 58 75.9
FAN12G1799 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.2e-19 99.8 58 75.9
FAN22G0163 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.2e-19 99.8 58 75.9
ClCG11G000260 Citrullus lanatus HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 77.6
Ciclev10004289m.g Citrus clementina HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 75.9
CsaV3_5G015660 Cucumis sativus L. HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 75.9
Lj6g0015914 Lotus japonicus HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 75.9
Oeu008817.2 Olea europaea HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 77.6
Prupe.1G054000 Prunus persica HOM05D004599 ORTHO05D005564 1.5e-19 99.4 58 77.6
COL.COLO4_07140 Corchorus olitorius HOM05D004599 ORTHO05D005564 2.0e-19 99.0 70 64.3
Eucgr.H02878 Eucalyptus grandis HOM05D004599 ORTHO05D005564 2.0e-19 99.0 58 75.9
CAN.G812.39 Capsicum annuum HOM05D004599 ORTHO05D005564 2.6e-19 98.6 58 79.3
Migut.O00257 Erythranthe guttata HOM05D004599 ORTHO05D005564 2.6e-19 98.6 60 73.3
Cfa014829 Carpinus fangiana HOM05D004599 ORTHO05D005564 3.4e-19 98.2 58 77.6
Manes.03G155700 Manihot esculenta HOM05D004599 ORTHO05D005564 3.4e-19 98.2 58 74.1
Nitab4.5_0000451g0060 Nicotiana tabacum HOM05D004599 ORTHO05D005564 3.4e-19 98.2 58 75.9
Haze_11510 Corylus avellana HOM05D004599 ORTHO05D005564 4.4e-19 97.8 55 81.8
MELO3C022936.2 Cucumis melo HOM05D004599 ORTHO05D005564 4.4e-19 97.8 55 78.2
PGR004G1602 Punica granatum HOM05D004599 ORTHO05D005564 4.4e-19 97.8 58 74.1
DCAR_024304 Daucus carota HOM05D004599 ORTHO05D005564 5.7e-19 97.4 55 81.8
Glyma.10G130800 Glycine max HOM05D004599 ORTHO05D005564 5.7e-19 97.4 58 72.4
Lsat_1_v5_gn_6_67861 Lactuca sativa HOM05D004599 ORTHO05D005564 5.7e-19 97.4 56 78.6
Duzib151G0579 Durio zibethinus HOM05D004599 ORTHO05D005564 7.5e-19 97.1 55 80.0
Gohir.D02G032700 Gossypium hirsutum HOM05D004599 ORTHO05D005564 7.5e-19 97.1 58 75.9
Gorai.005G036200 Gossypium raimondii HOM05D004599 ORTHO05D005564 7.5e-19 97.1 58 75.9
Hma1.2p1_1076F.1_g254540 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 7.5e-19 97.1 58 75.9
Phvul.007G232800 Phaseolus vulgaris HOM05D004599 ORTHO05D005564 7.5e-19 97.1 58 72.4
Hund19266 Selenicereus undatus HOM05D004599 ORTHO05D005564 7.5e-19 97.1 57 73.7
Sc19g0005730 Simmondsia chinensis HOM05D004599 ORTHO05D005564 7.5e-19 97.1 57 77.2
VMungo0720G2025 Vigna mungo HOM05D004599 ORTHO05D005564 7.5e-19 97.1 58 74.1
CANSAT78G2223 Cannabis sativa HOM05D004599 ORTHO05D005564 9.8e-19 96.7 60 68.3
Nitab4.5_0000867g0040 Nicotiana tabacum HOM05D004599 ORTHO05D005564 9.8e-19 96.7 58 75.9
Potri.010G062700 Populus trichocarpa HOM05D004599 ORTHO05D005564 9.8e-19 96.7 55 80.0
Sabra10G0044000 Salix brachista HOM05D004599 ORTHO05D005564 9.8e-19 96.7 55 80.0
AUR62035344 Chenopodium quinoa HOM05D004599 ORTHO05D005564 1.3e-18 96.3 55 78.2
FAN17G0126 Fragaria x ananassa HOM05D004599 ORTHO05D005564 1.3e-18 96.3 58 72.4
ATR0088G024 Amborella trichopoda HOM05D004599 ORTHO05D005564 1.7e-18 95.9 73 56.2
Gohir.A02G025500 Gossypium hirsutum HOM05D004599 ORTHO05D005564 1.7e-18 95.9 58 74.1
HanXRQChr07g0185811 Helianthus annuus HOM05D004599 ORTHO05D005564 1.7e-18 95.9 58 74.1
RcHm_v2.0_Chr4g0396161 Rosa chinensis HOM05D004599 ORTHO05D005564 1.7e-18 95.9 58 72.4
TWI09G0954 Tripterygium wilfordii HOM05D004599 ORTHO05D005564 1.7e-18 95.9 58 75.9
ECA233G3541 Erigeron canadensis HOM05D004599 ORTHO05D005564 2.2e-18 95.5 56 76.8
Glyma.20G081500 Glycine max HOM05D004599 ORTHO05D005564 2.8e-18 95.1 58 70.7
Lj3A633T11 Lonicera japonica HOM05D004599 ORTHO05D005564 2.8e-18 95.1 55 78.2
SGA_v2.0_scaffold155G37242 Striga asiatica HOM05D004599 ORTHO05D005564 2.8e-18 95.1 55 72.7
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 2.8e-18 95.1 54 75.9
MD13G1226600 Malus domestica HOM05D004599 ORTHO05D005564 3.7e-18 94.7 58 72.4
Ca_26211_v3 Cicer arietinum L. HOM05D004599 ORTHO05D005564 4.8e-18 94.4 58 69.0
Duzib212G0332 Durio zibethinus HOM05D004599 ORTHO05D005564 4.8e-18 94.4 58 72.4
unitig_32.g10859 Utricularia gibba HOM05D004599 ORTHO05D005564 4.8e-18 94.4 58 69.0
AL7G43140 Arabidopsis lyrata HOM05D004599 ORTHO05D005564 8.3e-18 93.6 60 70.0
AT4G13550 Arabidopsis thaliana HOM05D004599 ORTHO05D005564 8.3e-18 93.6 60 70.0
BcaB03g16085 Brassica carinata HOM05D004599 ORTHO05D005564 8.3e-18 93.6 60 68.3
Aqoxy5G00088 Aquilegia oxysepala HOM05D004599 ORTHO05D005564 1.1e-17 93.2 54 75.9
Carub.0007s2899 Capsella rubella HOM05D004599 ORTHO05D005564 1.1e-17 93.2 60 68.3
TPR.G23991 Trifolium pratense HOM05D004599 ORTHO05D005564 1.1e-17 93.2 58 70.7
Nn1g03051 Nelumbo nucifera HOM05D004599 ORTHO05D005564 1.8e-17 92.4 54 74.1
Lalb_Chr03g0036871 Lupinus albus HOM05D004599 ORTHO05D005564 2.4e-17 92.0 73 52.1
Psat0s3917g0040 Pisum sativum HOM05D004599 ORTHO05D005564 3.1e-17 91.7 58 67.2
CDE05G1179 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 4.1e-17 91.3 60 66.7
A04p08630 Brassica napus HOM05D004599 ORTHO05D005564 5.4e-17 90.9 55 70.9
BraA04t16557Z Brassica rapa HOM05D004599 ORTHO05D005564 5.4e-17 90.9 55 70.9
PSO832G1760 Papaver somniferum HOM05D004599 ORTHO05D005564 5.4e-17 90.9 54 74.1
Sp7g11150 Schrenkiella parvula HOM05D004599 ORTHO05D005564 7.0e-17 90.5 60 65.0
arahy.Tifrunner.gnm1.ann1.7X6UW5 Arachis hypogaea HOM05D004599 ORTHO05D005564 9.1e-17 90.1 55 69.1
Medtr1g045930 Medicago truncatula HOM05D004599 ORTHO05D005564 9.1e-17 90.1 58 67.2
BcaC02g09417 Brassica carinata HOM05D004599 ORTHO05D005564 1.6e-16 89.4 60 63.3
MBI07_g14440_MAGBIO Magnolia biondii HOM05D004599 ORTHO05D005564 2.7e-16 88.6 58 63.8
Os04g0509100 Oryza sativa ssp. japonica HOM05D004599 ORTHO05D005564 2.7e-16 88.6 58 63.8
Psat0s2340g0040 Pisum sativum HOM05D004599 ORTHO05D005564 2.7e-16 88.6 58 63.8
C04p42390 Brassica napus HOM05D004599 ORTHO05D005564 4.5e-16 87.8 55 67.3
BolC4t25820H Brassica oleracea HOM05D004599 ORTHO05D005564 4.5e-16 87.8 55 67.3
Zm00001eb426320 Zea mays HOM05D004599 ORTHO05D005564 1.7e-15 85.9 58 60.3
Ah.13g074980 Amaranthus hybridus HOM05D004599 ORTHO05D005564 2.3e-15 85.5 59 66.1
Pp3c16_6180 Physcomitrium patens HOM05D004599 ORTHO05D005564 4.9e-10 67.8 53 52.8
Hma1.2p1_1076F.1_g254550 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 6.3e-10 67.4 37 75.7
SMO358G0364 Selaginella moellendorffii HOM05D004599 ORTHO05D005564 5.9e-08 60.8 53 47.2
Dinv27138 Davidia involucrata HOM05D004599 ORTHO05D005564 1.7e-07 59.3 30 80.0
GSVIVG01001864001 Vitis vinifera HOM05D004599 ORTHO05D005564 3.9e-07 58.2 30 80.0
Mapoly0081s0062 Marchantia polymorpha HOM05D004599 ORTHO05D005564 1.9e-06 55.8 53 43.4


User provided reference genes

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