Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.1e-23 112.8 72 100.0
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 6.7e-10 67.0 72 54.2
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.7e-08 62.4 32 84.4
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.2e-08 62.0 27 100.0
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 2.2e-08 62.0 27 100.0
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.2e-08 62.0 27 100.0
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 2.8e-08 61.6 27 96.3
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 2.8e-08 61.6 61 55.7
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 2.8e-08 61.6 27 96.3
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 2.8e-08 61.6 32 84.4
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 3.7e-08 61.2 29 93.1
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 4.8e-08 60.8 32 84.4
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.8e-08 60.8 32 84.4
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.8e-08 60.8 32 84.4
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 4.8e-08 60.8 32 84.4
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 6.3e-08 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.3e-08 60.5 32 81.2
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 6.3e-08 60.5 27 96.3
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 6.3e-08 60.5 27 92.6
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 6.3e-08 60.5 27 96.3
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 6.3e-08 60.5 27 92.6
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 96.3
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 96.3
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 92.6
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 92.6
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 96.3
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 96.3
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 96.3
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 8.2e-08 60.1 27 92.6
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 1.1e-07 59.7 32 81.2
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.1e-07 59.7 27 92.6
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.1e-07 59.7 27 96.3
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 1.1e-07 59.7 27 92.6
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.4e-07 59.3 29 89.7
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.4e-07 59.3 29 89.7
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.4e-07 59.3 29 89.7
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 1.4e-07 59.3 27 88.9
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 1.4e-07 59.3 27 96.3
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.4e-07 59.3 32 81.2
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.4e-07 59.3 32 81.2
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.8e-07 58.9 29 89.7
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.8e-07 58.9 27 88.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.8e-07 58.9 27 92.6
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.8e-07 58.9 27 96.3
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.8e-07 58.9 27 88.9
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 2.4e-07 58.5 32 84.4
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 2.4e-07 58.5 27 92.6
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 2.4e-07 58.5 35 77.1
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 3.1e-07 58.2 27 88.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 3.1e-07 58.2 27 88.9
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 3.1e-07 58.2 32 81.2
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 3.1e-07 58.2 27 92.6
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 3.1e-07 58.2 27 92.6
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 4.1e-07 57.8 27 88.9
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 4.1e-07 57.8 27 92.6
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 4.1e-07 57.8 27 92.6
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 4.1e-07 57.8 27 92.6
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 4.1e-07 57.8 32 81.2
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 4.1e-07 57.8 27 92.6
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 5.3e-07 57.4 28 89.3
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 5.3e-07 57.4 27 85.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 5.3e-07 57.4 27 92.6
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 5.3e-07 57.4 27 85.2
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 5.3e-07 57.4 27 85.2
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 5.3e-07 57.4 27 88.9
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.9e-07 57.0 32 75.0
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.9e-07 57.0 32 75.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 6.9e-07 57.0 27 92.6
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 6.9e-07 57.0 27 92.6
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 6.9e-07 57.0 27 92.6
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 6.9e-07 57.0 27 92.6
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 9.1e-07 56.6 29 86.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 9.1e-07 56.6 29 86.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 9.1e-07 56.6 27 88.9
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 9.1e-07 56.6 27 88.9
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 1.2e-06 56.2 29 86.2
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 1.5e-06 55.8 29 82.8
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 1.5e-06 55.8 29 82.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.5e-06 55.8 27 85.2
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.5e-06 55.8 27 85.2
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.5e-06 55.8 29 86.2
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.0e-06 55.5 26 92.3
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 2.0e-06 55.5 29 82.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.0e-06 55.5 32 75.0
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 2.0e-06 55.5 27 88.9
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.0e-06 55.5 27 88.9
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.0e-06 55.5 27 88.9
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.4e-06 54.7 27 81.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.4e-06 54.7 27 81.5
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 3.4e-06 54.7 27 85.2
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 5.9e-06 53.9 29 82.8


User provided reference genes

Program Settings