Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.8e-43 177.6 99 100.0
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.8e-40 167.9 96 97.9
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 7.3e-23 110.5 92 70.7
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 8.0e-22 107.1 99 63.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.3e-21 105.5 97 68.0
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 4.0e-21 104.8 104 65.4
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 4.0e-21 104.8 99 65.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 5.2e-21 104.4 92 69.6
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.5e-20 102.8 99 62.6
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 2.0e-20 102.4 99 58.6
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-20 101.7 101 63.4
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 7.5e-20 100.5 100 67.0
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 9.8e-20 100.1 98 62.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.3e-19 99.8 97 62.9
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.7e-19 99.4 97 62.9
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.7e-19 99.4 101 60.4
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.2e-19 99.0 97 63.9
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.9e-19 98.6 98 66.3
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 3.7e-19 98.2 99 62.6
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 4.9e-19 97.8 100 62.0
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 4.9e-19 97.8 97 61.9
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 6.4e-19 97.4 98 68.4
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.1e-18 96.7 99 59.6
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.4e-18 96.3 99 59.6
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 3.2e-18 95.1 83 71.1
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 4.1e-18 94.7 92 67.4
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.1e-18 94.7 104 63.5
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.4e-18 94.4 99 59.6
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 5.4e-18 94.4 99 68.7
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 7.0e-18 94.0 99 60.6
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.6e-17 92.8 92 65.2
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.6e-17 92.8 98 61.2
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.0e-17 92.4 94 61.7
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 2.7e-17 92.0 93 68.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.6e-17 91.3 99 58.6
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 6.0e-17 90.9 76 75.0
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.0e-17 90.9 99 58.6
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.0e-17 90.9 94 61.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 7.8e-17 90.5 97 56.7
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.0e-16 90.1 92 58.7
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.0e-16 90.1 97 58.8
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.0e-16 90.1 97 62.9
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.3e-16 89.7 99 61.6
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.3e-16 89.7 98 57.1
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 1.7e-16 89.4 98 59.2
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.7e-16 89.4 92 58.7
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.7e-16 89.4 99 62.6
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.3e-16 89.0 96 62.5
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 3.9e-16 88.2 100 58.0
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 5.0e-16 87.8 94 60.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.1e-15 86.7 97 56.7
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-15 86.7 97 56.7
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.9e-15 85.9 92 65.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.9e-15 85.9 92 64.1
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.5e-15 85.5 102 60.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.5e-15 85.5 99 56.6
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 3.3e-15 85.1 99 51.5
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 7.3e-15 84.0 92 56.5
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 7.3e-15 84.0 92 56.5
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 7.3e-15 84.0 92 63.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.2e-14 83.2 97 57.7
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.2e-14 83.2 92 55.4
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.6e-14 82.8 95 58.9
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 97 59.8
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 97 59.8
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.6e-14 82.8 97 59.8
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 2.1e-14 82.4 92 60.9
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.6e-14 81.6 92 58.7
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 4.7e-14 81.3 93 59.1
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 1.8e-13 79.3 93 52.7
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 4.0e-13 78.2 97 53.6
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 5.2e-13 77.8 102 55.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 6.8e-13 77.4 93 59.1
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 8.9e-13 77.0 93 53.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 8.9e-13 77.0 97 53.6
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 8.9e-13 77.0 97 53.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 8.9e-13 77.0 93 54.8
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 1.2e-12 76.6 97 55.7
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.0e-12 75.9 92 56.5
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 2.6e-12 75.5 98 50.0
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 3.4e-12 75.1 98 48.0
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 7.5e-12 73.9 98 54.1
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 7.5e-12 73.9 98 49.0
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 9.9e-12 73.6 97 52.6
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.3e-11 73.2 92 54.3
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.7e-11 72.8 89 56.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.7e-11 72.8 89 56.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.7e-11 72.8 94 53.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.7e-11 72.8 96 54.2
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 3.7e-11 71.6 82 61.0
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 6.4e-11 70.9 96 55.2
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 8.3e-11 70.5 95 47.4
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 2.4e-10 68.9 95 52.6
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 3.2e-10 68.6 97 52.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.1e-10 68.2 98 56.1
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 4.1e-10 68.2 94 50.0
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 4.1e-10 68.2 85 56.5
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 5.4e-10 67.8 85 55.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 5.4e-10 67.8 90 52.2
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 7.1e-10 67.4 97 49.5
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 7.1e-10 67.4 93 53.8
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 9.2e-10 67.0 88 52.3
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 1.2e-09 66.6 97 48.5
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.2e-09 66.6 93 57.0
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.1e-09 65.9 91 47.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.5e-09 65.1 92 47.8
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 4.6e-09 64.7 88 53.4
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.3e-08 62.4 91 45.1
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 2.3e-08 62.4 43 74.4
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 5.1e-08 61.2 82 54.9
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-07 60.1 43 72.1
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.1e-06 55.8 93 45.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 2.8e-06 55.5 31 80.6
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.6e-06 55.1 71 45.1


User provided reference genes

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