Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 7.7e-33 143.3 75 100.0
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.6e-25 118.2 75 78.7
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.5e-23 111.7 90 68.9
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.5e-23 111.7 90 68.9
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.1e-20 102.8 89 64.0
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 7.4e-20 100.1 88 63.6
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.1e-18 96.3 93 61.3
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.4e-18 95.9 91 58.2
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 2.4e-18 95.1 91 59.3
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 4.1e-18 94.4 92 59.8
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 2.6e-17 91.7 91 57.1
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 2.6e-17 91.7 91 56.0
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 7.7e-17 90.1 92 55.4
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.3e-16 89.4 92 55.4
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.3e-16 89.4 92 53.3
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.3e-16 89.4 92 53.3
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 2.9e-16 88.2 91 54.9
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 6.5e-16 87.0 87 57.5
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 6.5e-16 87.0 87 57.5
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 6.5e-16 87.0 86 58.1
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 8.5e-16 86.7 91 51.6
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 1.5e-15 85.9 92 53.3
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.9e-15 85.5 92 52.2
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 2.5e-15 85.1 87 54.0
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 3.2e-15 84.7 86 54.7
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 4.2e-15 84.3 86 54.7
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 4.2e-15 84.3 86 57.0
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 5.5e-15 84.0 86 54.7
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 7.2e-15 83.6 86 55.8
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 7.2e-15 83.6 86 53.5
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 9.4e-15 83.2 85 52.9
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 1.2e-14 82.8 86 55.8
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.6e-14 82.4 86 52.3
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.6e-14 82.4 86 52.3
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.6e-14 82.4 86 52.3
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.6e-14 82.4 86 52.3
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 2.1e-14 82.0 86 52.3
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 2.1e-14 82.0 86 55.8
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.1e-14 82.0 86 55.8
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 2.1e-14 82.0 86 53.5
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.7e-14 81.6 82 57.3
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 2.7e-14 81.6 87 54.0
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 2.7e-14 81.6 87 55.2
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 3.6e-14 81.3 91 51.6
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.6e-14 81.3 86 55.8
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.6e-14 81.3 86 55.8
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.6e-14 81.3 86 55.8
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.6e-14 81.3 87 52.9
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 4.7e-14 80.9 91 50.5
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 4.7e-14 80.9 86 51.2
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 4.7e-14 80.9 87 54.0
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 4.7e-14 80.9 89 50.6
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 4.7e-14 80.9 87 54.0
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 6.1e-14 80.5 86 54.7
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 8.0e-14 80.1 84 53.6
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 8.0e-14 80.1 86 52.3
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 8.0e-14 80.1 87 52.9
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 8.0e-14 80.1 87 52.9
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 1.0e-13 79.7 85 52.9
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 1.8e-13 79.0 86 52.3
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.8e-13 79.0 86 54.7
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 1.8e-13 79.0 85 52.9
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 1.8e-13 79.0 85 52.9
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 1.8e-13 79.0 86 52.3
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 2.3e-13 78.6 84 52.4
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.3e-13 78.6 87 51.7
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.3e-13 78.6 91 48.4
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 3.0e-13 78.2 87 50.6
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 3.0e-13 78.2 80 56.2
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 4.0e-13 77.8 86 52.3
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 4.0e-13 77.8 82 52.4
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 4.0e-13 77.8 87 50.6
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.0e-13 77.8 87 50.6
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.0e-13 77.8 87 50.6
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 5.2e-13 77.4 87 52.9
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 5.2e-13 77.4 87 50.6
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 6.8e-13 77.0 87 50.6
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 6.8e-13 77.0 87 50.6
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 6.8e-13 77.0 87 50.6
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 8.8e-13 76.6 86 50.0
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.2e-12 76.3 87 49.4
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.2e-12 76.3 86 51.2
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.2e-12 76.3 86 51.2
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 1.2e-12 76.3 86 52.3
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.2e-12 76.3 91 47.3
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.2e-12 76.3 87 51.7
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.5e-12 75.9 84 50.0
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 1.5e-12 75.9 87 49.4
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 1.5e-12 75.9 86 51.2
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 1.5e-12 75.9 87 50.6
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 1.5e-12 75.9 84 51.2
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.0e-12 75.5 87 50.6
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 2.0e-12 75.5 87 51.7
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 2.6e-12 75.1 87 50.6
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 2.6e-12 75.1 87 49.4
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 2.6e-12 75.1 86 50.0
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 2.6e-12 75.1 86 48.8
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 4.4e-12 74.3 97 47.4
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 4.4e-12 74.3 87 49.4
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 5.7e-12 73.9 86 51.2
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 5.7e-12 73.9 87 49.4
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 9.7e-12 73.2 87 49.4
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 1.7e-11 72.4 87 48.3
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 2.2e-11 72.0 91 47.3
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 3.7e-11 71.2 81 50.6
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 6.3e-11 70.5 83 50.6
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.4e-10 69.3 84 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 1.8e-10 68.9 93 45.2
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 1.6e-09 65.9 84 41.7
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 2.7e-09 65.1 81 45.7
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 4.5e-09 64.3 83 45.8
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 2.2e-08 62.0 83 44.6
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 1.2e-06 56.2 63 52.4
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 3.6e-06 54.7 85 38.8


User provided reference genes

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