Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 6.5e-105 384.0 190 100.0
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 9.8e-77 290.4 190 79.5
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 1.9e-51 206.5 193 60.6
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.9e-33 145.6 79 88.6
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 3.5e-26 122.5 80 72.5
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 9.7e-24 114.4 80 70.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 9.7e-24 114.4 116 53.4
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.8e-22 110.2 84 64.3
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 3.1e-22 109.4 83 63.9
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 6.9e-22 108.2 83 62.7
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 6.9e-22 108.2 116 51.7
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 9.0e-22 107.8 80 67.5
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.5e-21 107.1 80 66.2
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.7e-20 103.6 83 61.4
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.4e-19 100.5 80 57.5
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.5e-19 99.8 81 61.7
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 3.2e-19 99.4 117 49.6
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 7.2e-19 98.2 80 62.5
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 7.2e-19 98.2 116 47.4
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 7.2e-19 98.2 94 55.3
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.6e-18 97.1 77 61.0
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 7.9e-18 94.7 77 61.0
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.4e-17 94.0 90 56.7
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 1.4e-17 94.0 83 55.4
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.4e-17 94.0 77 58.4
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.4e-17 94.0 79 55.7
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.4e-17 94.0 85 57.6
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 2.3e-17 93.2 82 57.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 3.0e-17 92.8 78 57.7
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 3.0e-17 92.8 78 61.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 3.9e-17 92.4 79 55.7
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.9e-17 92.4 80 60.0
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 5.1e-17 92.0 83 53.0
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 5.1e-17 92.0 104 46.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.1e-17 92.0 79 54.4
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 5.1e-17 92.0 79 55.7
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 6.7e-17 91.7 77 59.7
CSS0042036 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.1e-16 90.9 58 75.9
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.1e-16 90.9 105 46.7
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.1e-16 90.9 82 57.3
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.1e-16 90.9 80 60.0
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.1e-16 90.9 80 60.0
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.5e-16 90.5 83 56.6
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.5e-16 90.5 83 54.2
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.5e-16 90.5 86 57.0
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.5e-16 90.5 82 57.3
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.0e-16 90.1 78 59.0
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 2.0e-16 90.1 81 59.3
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.5e-16 89.7 80 60.0
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.5e-16 89.7 80 58.8
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 3.3e-16 89.4 75 60.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 4.3e-16 89.0 80 57.5
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 4.3e-16 89.0 81 59.3
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 4.3e-16 89.0 93 55.9
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.3e-16 89.0 80 58.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 5.7e-16 88.6 78 60.3
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 7.4e-16 88.2 78 59.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 9.7e-16 87.8 80 58.8
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.3e-15 87.4 80 56.2
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.7e-15 87.0 79 55.7
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.8e-15 86.3 81 53.1
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 2.8e-15 86.3 80 52.5
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.8e-15 86.3 78 57.7
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 3.7e-15 85.9 80 56.2
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 3.7e-15 85.9 80 53.8
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.8e-15 85.5 79 57.0
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 6.3e-15 85.1 83 55.4
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.1e-14 84.3 83 53.0
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.1e-14 84.3 86 55.8
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-14 84.3 119 42.9
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.8e-14 83.6 81 56.8
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 5.3e-14 82.0 86 55.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 6.9e-14 81.6 81 56.8
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 9.1e-14 81.3 78 52.6
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.2e-13 80.9 83 49.4
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.5e-13 80.5 77 57.1
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.5e-13 80.5 82 54.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.0e-13 80.1 83 55.4
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.6e-13 79.7 78 52.6
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 4.5e-13 79.0 80 50.0
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 7.7e-13 78.2 80 53.8
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.3e-12 77.4 81 54.3
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.7e-12 77.0 85 54.1
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.7e-12 77.0 81 49.4
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 2.2e-12 76.6 83 53.0
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 2.2e-12 76.6 81 49.4
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 3.8e-12 75.9 81 54.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.9e-11 73.6 81 46.9
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 2.5e-11 73.2 81 50.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 4.2e-11 72.4 74 51.4
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 4.2e-11 72.4 81 50.6
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 4.2e-11 72.4 81 50.6
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 4.2e-11 72.4 81 50.6
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-10 70.9 81 48.1
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.2e-10 70.9 81 48.1
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.2e-10 70.9 81 51.9
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.2e-10 70.9 80 45.0
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.6e-10 70.5 77 50.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 2.1e-10 70.1 73 53.4
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.6e-10 69.3 81 50.6
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 4.7e-10 68.9 81 48.1
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.4e-09 67.4 82 51.2
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.5e-08 63.9 59 50.8
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 4.4e-08 62.4 83 43.4
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 7.4e-08 61.6 65 49.2
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 9.7e-08 61.2 48 60.4
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.1e-06 56.2 64 50.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.1e-06 55.8 77 39.0


User provided reference genes

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