Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 4.4e-46 187.6 92 100.0
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 4.4e-46 187.6 92 100.0
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 5.5e-25 117.5 101 62.4
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 1.2e-24 116.3 114 56.1
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.1e-24 114.0 92 63.0
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.1e-24 114.0 92 64.1
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 8.0e-24 113.6 101 62.4
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.0e-23 111.7 103 58.3
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 4.0e-23 111.3 89 66.3
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.2e-23 110.9 101 58.4
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.2e-23 110.9 101 58.4
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.2e-21 105.5 73 71.2
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 3.7e-21 104.8 104 55.8
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 6.3e-21 104.0 104 55.8
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 8.3e-21 103.6 66 75.8
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.1e-20 103.2 73 69.9
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.4e-20 102.1 64 76.6
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 2.4e-20 102.1 97 56.7
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 2.4e-20 102.1 73 68.5
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 7.0e-20 100.5 97 54.6
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.6e-19 99.4 72 66.7
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.6e-19 99.4 104 53.8
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 3.5e-19 98.2 94 55.3
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 3.5e-19 98.2 102 51.0
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 4.5e-19 97.8 102 57.8
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 2.2e-18 95.5 105 51.4
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 8.5e-18 93.6 101 55.4
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.1e-17 93.2 70 64.3
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 1.9e-17 92.4 91 51.6
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 3.2e-17 91.7 92 56.5
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 4.2e-17 91.3 72 63.9
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.6e-16 89.4 96 56.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 2.8e-16 88.6 96 47.9
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 2.8e-16 88.6 99 53.5
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 2.8e-16 88.6 97 47.4
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 3.6e-16 88.2 99 53.5
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 4.7e-16 87.8 99 49.5
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 6.1e-16 87.4 93 52.7
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 6.1e-16 87.4 66 63.6
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 6.1e-16 87.4 101 52.5
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 8.0e-16 87.0 72 59.7
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 2.3e-15 85.5 90 50.0
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 3.0e-15 85.1 94 50.0
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.0e-15 85.1 70 57.1
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 4.0e-15 84.7 70 58.6
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 5.2e-15 84.3 94 46.8
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 6.8e-15 84.0 64 59.4
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 8.8e-15 83.6 107 47.7
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 1.5e-14 82.8 72 59.7
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 2.0e-14 82.4 92 51.1
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 2.0e-14 82.4 70 57.1
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 2.6e-14 82.0 64 60.9
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 3.4e-14 81.6 66 60.6
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 3.4e-14 81.6 64 62.5
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 4.4e-14 81.3 66 57.6
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 5.7e-14 80.9 66 56.1
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 1.1e-12 76.6 65 55.4
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 4.1e-12 74.7 65 53.8
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 5.4e-12 74.3 64 57.8
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 7.0e-12 73.9 97 43.3
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 2.0e-11 72.4 93 47.3
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 1.7e-10 69.3 101 40.6
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 2.3e-10 68.9 68 48.5
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 8.6e-10 67.0 62 53.2
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 1.9e-09 65.9 75 45.3
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 3.3e-09 65.1 96 49.0
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.3e-09 64.7 84 47.6
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 5.6e-09 64.3 106 42.5
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 1.2e-08 63.2 69 44.9
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 2.1e-08 62.4 66 48.5
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.1e-08 62.4 92 41.3
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 2.8e-08 62.0 64 50.0
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.6e-08 61.6 64 46.9
Hma1.2p1_0766F.1_g215310 Hydrangea macrophylla HOM05D007791 ORTHO05D028502 3.6e-08 61.6 62 45.2
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 3.6e-08 61.6 61 47.5
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 4.7e-08 61.2 67 43.3
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 6.1e-08 60.8 65 52.3
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 8.0e-08 60.5 64 45.3
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 8.0e-08 60.5 66 47.0
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 8.0e-08 60.5 69 44.9
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 1.0e-07 60.1 64 46.9
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.0e-07 60.1 64 54.7
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 1.4e-07 59.7 65 44.6
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 2.3e-07 58.9 64 50.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.0e-07 58.5 68 45.6
CAN.G324.21 Capsicum annuum HOM05D007791 ORTHO05D028502 4.0e-07 58.2 63 44.4
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 4.0e-07 58.2 64 48.4
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 4.0e-07 58.2 64 46.9
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 4.0e-07 58.2 64 46.9
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 4.0e-07 58.2 64 43.8
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 4.0e-07 58.2 67 46.3
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 5.2e-07 57.8 66 40.9
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 5.2e-07 57.8 64 46.9
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 5.2e-07 57.8 64 45.3
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 6.8e-07 57.4 78 39.7
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 6.8e-07 57.4 64 45.3
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 6.8e-07 57.4 66 42.4
PGSC0003DMG400011009 Solanum tuberosum HOM05D007791 ORTHO05D028502 6.8e-07 57.4 63 44.4
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 6.8e-07 57.4 64 46.9
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 8.9e-07 57.0 64 45.3
DCAR_011993 Daucus carota HOM05D001004 ORTHO05D000653 1.2e-06 56.6 68 45.6
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 1.2e-06 56.6 66 40.9
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 1.2e-06 56.6 66 40.9
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 43.8
EL10Ac5g10437 Beta vulgaris HOM05D001004 ORTHO05D000653 1.5e-06 56.2 75 44.0
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.5e-06 56.2 64 45.3
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 47.0
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 47.0
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 1.5e-06 56.2 64 45.3
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.0e-06 55.8 67 44.8
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.6e-06 55.5 65 46.2
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 2.6e-06 55.5 64 43.8
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.6e-06 55.5 64 46.9
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 2.6e-06 55.5 64 45.3
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 2.6e-06 55.5 64 46.9
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.6e-06 55.5 66 47.0
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 45.3
Ciclev10006680m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 43.8
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 46.9
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 45.3
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 46.9
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 45.3
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 40.0
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.4e-06 55.1 66 43.9
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 3.4e-06 55.1 64 45.3
Sopen10g034330 Solanum pennellii HOM05D007791 ORTHO05D028502 3.4e-06 55.1 63 42.9
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 3.4e-06 55.1 68 44.1
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 43.8
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 46.9
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 43.8
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 40.6
Migut.A00976 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 42.2
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 5.7e-06 54.3 65 44.6
Duzib114G0743 Durio zibethinus HOM05D001004 ORTHO05D000653 5.7e-06 54.3 64 45.3
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 5.7e-06 54.3 64 46.9
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.5e-06 53.9 65 44.6
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.5e-06 53.9 65 44.6
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 7.5e-06 53.9 64 42.2
Prupe.I000200 Prunus persica HOM05D001004 ORTHO05D000653 7.5e-06 53.9 64 45.3
CAN.G1871.1 Capsicum annuum HOM05D001004 ORTHO05D000653 9.8e-06 53.5 66 42.4
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 9.8e-06 53.5 70 42.9
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.8e-06 53.5 64 45.3
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 9.8e-06 53.5 64 46.9
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 9.8e-06 53.5 64 45.3
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 9.8e-06 53.5 64 43.8
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 9.8e-06 53.5 64 46.9


User provided reference genes

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