Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.8e-202 708.4 349 100.0
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 7.9e-165 583.9 347 79.5
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 2.5e-150 535.8 349 72.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 8.5e-143 510.8 348 70.7
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.9e-142 509.6 340 77.1
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.1e-141 506.1 349 68.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.4e-140 503.4 349 67.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 8.8e-140 500.7 349 69.9
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 1.7e-138 496.5 299 79.3
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.7e-138 496.5 349 68.8
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.8e-138 495.7 316 75.0
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 3.7e-138 495.4 335 70.4
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 8.2e-138 494.2 349 68.5
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.4e-137 493.4 349 67.3
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 4.1e-137 491.9 349 67.6
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 7.0e-137 491.1 349 68.5
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.3e-135 486.9 340 69.1
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.3e-135 486.9 347 67.7
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.7e-135 486.5 352 68.8
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 6.5e-135 484.6 349 66.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 2.5e-134 482.6 350 67.7
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.5e-134 482.6 349 65.6
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.2e-134 482.3 352 68.2
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 9.4e-134 480.7 349 65.0
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.7e-133 479.2 352 67.6
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 2.7e-133 479.2 349 67.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.0e-132 477.2 356 64.0
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 3.0e-132 475.7 309 72.2
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.8e-132 474.6 349 64.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 6.8e-132 474.6 327 70.0
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 8.8e-132 474.2 349 65.0
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.8e-132 474.2 346 66.8
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.2e-131 473.8 347 66.0
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.2e-131 473.8 347 66.0
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 3.4e-131 472.2 352 66.8
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.4e-131 471.9 347 65.7
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.4e-131 471.9 347 65.7
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 4.4e-131 471.9 340 65.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 5.7e-131 471.5 346 63.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 7.5e-131 471.1 338 67.2
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.7e-130 468.8 347 65.7
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 4.8e-130 468.4 351 65.2
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 4.8e-130 468.4 341 68.9
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.1e-129 467.2 349 63.6
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.1e-129 467.2 348 65.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.4e-129 466.8 350 66.0
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.8e-129 466.5 350 65.4
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.8e-129 466.5 349 65.0
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 4.1e-129 465.3 349 63.9
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 1.6e-128 463.4 347 64.3
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.7e-128 462.6 353 64.6
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.0e-127 460.7 353 63.5
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.0e-127 460.7 337 62.3
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 2.2e-127 459.5 354 62.7
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 5.0e-127 458.4 323 65.9
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 6.5e-127 458.0 348 64.4
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 6.5e-127 458.0 336 64.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 3.6e-125 452.2 349 63.0
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.6e-125 452.2 349 62.8
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 4.7e-125 451.8 325 66.5
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 8.0e-125 451.1 343 63.6
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.4e-124 450.3 365 61.4
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.0e-124 449.1 346 62.4
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 4.0e-124 448.7 350 62.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 5.7e-123 444.9 347 62.8
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.1e-121 440.7 349 62.5
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 2.7e-120 436.0 366 59.0
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 3.5e-120 435.6 297 67.3
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.7e-119 433.3 366 59.0
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.9e-119 432.6 347 58.8
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.5e-118 430.3 304 65.1
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 3.3e-118 429.1 359 57.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 5.6e-118 428.3 330 59.1
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 9.5e-118 427.6 337 61.7
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.6e-117 426.8 350 58.0
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.6e-117 425.6 280 70.0
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.2e-115 420.6 349 60.5
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.0e-115 419.9 337 59.9
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.3e-111 407.1 341 59.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.5e-110 402.9 352 54.5
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 8.0e-109 397.9 349 57.9
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.0e-107 393.3 349 55.9
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 4.4e-107 392.1 350 56.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.2e-106 389.8 296 62.8
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 6.4e-106 388.3 342 57.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.2e-104 384.0 349 55.6
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.2e-104 384.0 349 52.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.0e-104 383.3 349 56.2
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.5e-104 382.5 286 62.2
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.1e-102 377.5 299 60.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.3e-102 375.6 349 53.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 7.3e-102 374.8 349 53.6
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 9.5e-102 374.4 349 53.6
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.8e-101 372.9 350 54.9
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.8e-101 372.9 350 54.9
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.6e-101 372.5 352 52.8
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 8.1e-101 371.3 349 53.3
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 5.2e-100 368.6 348 52.6
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.3e-98 364.0 349 51.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.7e-98 362.5 349 50.1
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 2.7e-96 356.3 250 67.6
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 6.0e-96 355.1 339 52.2
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 5.2e-92 342.0 314 53.5
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 7.6e-83 311.6 277 57.0
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.4e-81 305.4 220 65.0
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 8.1e-77 291.6 323 44.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.6e-75 286.6 296 49.3
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 3.8e-74 282.7 332 43.4
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 6.4e-74 282.0 343 44.0
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.1e-73 281.2 286 47.6
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 1.9e-70 270.4 315 47.0
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 7.6e-67 258.5 335 39.7
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 9.9e-67 258.1 293 42.3
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.7e-64 250.0 190 59.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.5e-54 217.6 154 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.7e-54 214.9 291 37.8
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-50 202.2 311 38.3
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.5e-49 200.3 282 36.5
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.5e-49 199.1 323 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-47 193.7 287 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-46 191.0 285 37.9
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.8e-45 186.0 315 34.3
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.6e-43 180.3 285 35.4
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-42 177.9 298 35.6
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.2e-41 172.2 248 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.2e-41 172.2 299 33.4
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.4e-41 171.8 292 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-40 169.1 309 31.7
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 304 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-39 167.5 293 32.8
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.1e-39 166.0 293 33.4
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-38 164.9 257 36.2
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-36 156.0 291 34.0
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.1e-36 155.2 291 33.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-33 146.4 291 32.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.1e-32 142.5 318 30.8
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-26 123.6 270 30.7
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.2e-24 118.2 280 30.0
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-15 87.8 66 54.5
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.3e-13 79.3 93 45.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.8e-12 77.8 152 33.6
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.1e-12 77.0 74 43.2
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 9.1e-12 75.5 70 47.1


User provided reference genes

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