Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1797.7 907 100.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1617.8 972 87.9
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1373.2 971 76.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1372.5 955 76.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1354.3 990 74.4
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1354.0 980 73.9
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1345.9 996 73.8
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1340.9 979 73.4
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1335.1 977 73.7
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1334.3 977 73.6
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1332.8 979 73.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1323.5 979 72.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1323.1 977 72.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1317.8 978 72.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1314.3 979 73.1
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1313.9 989 71.6
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1308.9 978 72.3
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1305.0 978 72.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1303.1 978 72.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1302.7 980 72.1
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1302.7 978 72.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1302.0 979 72.0
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1301.6 980 72.4
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1300.8 976 71.8
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1299.3 989 71.7
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1298.9 978 72.1
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1286.9 1003 69.2
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1286.9 1027 69.2
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1286.6 979 70.7
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1283.9 1023 69.3
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1283.9 1033 67.4
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1283.1 1027 69.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1282.3 1003 69.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1278.1 978 71.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1276.5 1027 68.9
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1276.2 977 71.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1274.2 979 70.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1273.1 1002 69.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1272.7 979 71.2
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1271.5 956 71.8
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1270.8 979 69.5
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1268.8 977 69.6
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1268.1 1004 68.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1265.8 980 69.1
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1264.2 974 70.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1262.3 980 70.3
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1261.9 977 70.9
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1260.7 978 69.2
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1260.4 980 69.2
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1260.4 976 70.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 974 69.2
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 986 69.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1256.1 977 70.5
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1255.7 978 69.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1255.7 1034 67.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1253.4 978 69.3
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1252.7 978 69.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1250.3 978 69.3
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1250.3 978 69.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1246.5 983 70.0
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1246.1 976 69.9
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1243.4 979 69.3
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1242.6 974 69.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1235.7 983 68.3
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1234.6 976 69.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1234.2 976 69.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1228.0 973 70.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1226.5 1012 67.7
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1226.1 976 69.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1224.5 976 67.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1223.0 978 68.4
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1222.6 1015 67.2
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1221.5 994 69.0
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1221.1 956 70.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1220.7 1038 64.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1219.5 979 67.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1217.6 978 67.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1217.2 957 71.1
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1217.2 957 69.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1216.8 980 68.1
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1216.4 981 68.4
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1216.1 979 67.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1214.5 976 68.5
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1210.3 982 68.0
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1209.5 961 69.7
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1206.0 896 72.1
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1203.7 972 68.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1199.5 983 66.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1198.7 980 66.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1195.3 981 66.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1193.7 975 66.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1192.6 976 67.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1192.6 983 67.4
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1191.8 980 66.0
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1188.3 975 66.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1187.2 979 68.2
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1186.4 1038 64.0
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1186.0 985 66.3
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1184.9 976 67.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1184.9 1042 63.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1183.7 983 67.1
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1179.1 976 66.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1175.6 978 66.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1174.5 977 66.0
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1174.1 908 70.4
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1174.1 978 67.9
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1173.7 977 66.4
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1171.0 952 68.3
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1167.1 976 66.1
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1166.0 976 66.0
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1165.2 989 64.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1144.0 972 65.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1142.9 981 64.9
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1138.6 975 64.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 954 65.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1133.2 978 66.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1131.7 981 65.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1130.2 978 64.4
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1112.8 929 66.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1094.3 981 62.5
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1091.6 980 62.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1087.8 980 61.9
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1077.8 992 61.2
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 5.6e-311 1070.8 987 61.2
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 6.3e-307 1057.4 915 64.8
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.3e-293 1012.3 842 67.3
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 2.3e-280 969.1 956 58.8
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 6.6e-280 967.6 813 66.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 5.2e-269 931.4 764 68.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.6e-265 918.3 688 72.1
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 3.4e-244 849.0 609 74.1
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 3.4e-244 849.0 613 73.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 8.2e-230 801.2 611 71.0
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 6.9e-229 798.1 613 70.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.3e-215 752.7 963 50.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 1.8e-213 746.9 978 48.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 8.8e-208 728.0 522 74.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-202 711.1 547 71.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 9.8e-191 671.4 977 42.4
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.6e-185 654.1 1008 42.4
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.9e-163 579.7 514 63.8
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.6e-140 504.6 434 64.1
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-127 461.1 871 39.3
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 8.2e-121 439.1 365 65.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.2e-101 373.6 588 43.0
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 7.0e-96 356.3 310 63.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.1e-92 344.7 305 61.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.1e-92 344.7 305 61.6
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.3e-78 298.1 750 31.3
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.5e-77 293.5 511 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.0e-71 275.0 613 32.0
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.7e-71 274.6 283 57.2
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.8e-68 264.6 231 63.2
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 8.1e-60 236.5 258 55.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.9e-57 228.0 206 65.0
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 3.5e-55 221.1 152 73.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 2.5e-53 214.9 173 69.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.0e-50 205.3 163 66.9
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.0e-50 205.3 137 76.6
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 8.1e-44 183.3 123 78.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.0e-42 178.7 126 73.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.3e-38 166.0 124 71.8
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.9e-33 148.3 83 88.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 8.1e-28 130.2 92 76.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.6e-26 125.2 97 64.9
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.6e-26 125.2 97 64.9
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.3e-25 122.9 97 64.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 4.2e-16 91.3 140 43.6
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.6e-15 89.4 86 53.5
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.0e-14 86.7 47 80.9
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.7e-12 78.2 75 61.3
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 9.0e-11 73.6 43 79.1
Cc04_g15210 Coffea canephora HOM05D003952 ORTHO05D154321 3.0e-06 58.5 25 92.0


User provided reference genes

Program Settings