Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.1e-147 526.6 257 100.0
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.6e-136 488.8 257 91.8
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.3e-135 486.5 257 91.4
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 4.5e-133 478.0 257 89.1
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 4.5e-133 478.0 257 89.1
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.7e-132 476.1 256 89.5
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.9e-132 475.3 257 88.3
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.1e-131 473.4 257 87.5
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-131 473.0 256 89.1
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 1.9e-131 472.6 257 87.5
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.5e-131 472.2 257 87.9
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 3.2e-131 471.9 256 88.7
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 9.4e-131 470.3 257 87.5
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.2e-130 469.9 257 86.4
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.7e-130 468.8 256 87.1
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.7e-130 468.8 256 87.1
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 3.6e-130 468.4 257 87.5
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 7.9e-130 467.2 257 87.2
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.4e-129 466.5 257 87.2
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 5.2e-129 464.5 265 86.8
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 6.7e-129 464.2 258 88.0
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 8.8e-129 463.8 254 87.4
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 8.8e-129 463.8 257 86.8
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.6e-128 462.2 257 85.2
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.6e-128 462.2 257 87.5
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 3.3e-128 461.8 257 86.8
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.3e-128 461.8 254 87.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 4.4e-128 461.5 257 86.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 5.7e-128 461.1 255 86.7
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 86.8
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 86.8
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 86.4
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.3e-127 459.9 257 86.8
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.7e-127 459.5 256 85.9
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.7e-127 459.5 257 87.2
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 4.8e-127 458.0 256 85.5
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 6.3e-127 457.6 255 85.5
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 6.3e-127 457.6 257 86.8
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 8.2e-127 457.2 257 85.6
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 1.1e-126 456.8 257 85.2
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.1e-126 456.8 302 76.2
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 1.4e-126 456.4 257 86.4
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.8e-126 456.1 254 86.6
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.4e-126 455.7 257 84.8
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 7.0e-126 454.1 256 85.9
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 7.0e-126 454.1 257 84.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.6e-125 453.0 257 84.4
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 84.0
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 2.6e-125 452.2 257 84.4
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 4.5e-125 451.4 257 85.6
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 83.7
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 83.3
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.2e-124 449.1 257 84.0
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.2e-124 449.1 257 84.0
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 2.9e-124 448.7 258 83.7
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 83.3
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 83.3
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 8.5e-124 447.2 271 81.9
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.1e-123 446.8 271 81.5
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.1e-123 446.8 257 83.7
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.5e-123 446.4 257 82.9
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.5e-123 446.4 257 82.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 1.5e-123 446.4 257 82.9
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 1.5e-123 446.4 257 84.4
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 2.5e-123 445.7 257 82.5
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 3.2e-123 445.3 258 84.1
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 5.5e-123 444.5 257 83.3
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 82.9
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 2.1e-122 442.6 257 81.3
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 2.7e-122 442.2 263 82.1
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 6.1e-122 441.0 257 83.7
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 6.1e-122 441.0 257 83.7
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 6.1e-122 441.0 257 83.7
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.4e-121 439.9 230 93.0
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 5.2e-121 438.0 257 82.9
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 5.2e-121 438.0 257 82.9
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 5.2e-121 438.0 257 82.9
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 6.7e-121 437.6 257 83.3
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 1.2e-120 436.8 257 81.7
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.0e-120 436.0 257 81.7
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 4.4e-120 434.9 257 80.5
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 3.7e-119 431.8 255 80.8
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.5
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 3.1e-118 428.7 214 95.3
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 5.3e-118 427.9 257 78.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 2.9e-116 422.2 253 79.4
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 1.5e-115 419.9 257 78.6
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 3.2e-115 418.7 254 81.1
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 7.2e-115 417.5 257 80.2
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 8.8e-113 410.6 281 74.7
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.2e-112 410.2 257 77.4
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.5e-109 398.7 250 77.2
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 8.5e-108 394.0 214 87.4
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.5e-108 394.0 223 86.1
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.2e-104 383.6 257 75.1
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 3.7e-103 378.6 231 78.4
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 2.7e-101 372.5 257 73.2
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 4.7e-98 361.7 256 69.1
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.6e-93 346.7 247 68.4
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 2.0e-93 346.3 247 68.0
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 5.9e-93 344.7 198 84.8
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 2.5e-91 339.3 250 66.0
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.3e-91 338.6 203 77.8
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 3.7e-87 325.5 251 64.9
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 5.1e-76 288.5 170 80.0
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 4.3e-75 285.4 159 84.3
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.4e-73 280.4 153 86.3
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 3.3e-67 259.2 132 93.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.2e-64 250.8 142 83.1
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.1e-62 244.2 254 50.8
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 9.3e-62 241.1 248 48.8
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 6.2e-58 228.4 200 63.0
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 2.2e-55 219.9 130 81.5
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.2e-54 215.7 140 75.7
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.6e-53 212.2 112 91.1
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 2.5e-51 206.5 156 67.3
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 9.6e-51 204.5 274 41.2
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 1.5e-48 197.2 114 83.3
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 7.6e-48 194.9 257 47.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 9.9e-48 194.5 105 88.6
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 6.4e-47 191.8 105 87.6
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.5e-43 179.9 105 83.8
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 6.2e-42 175.3 105 79.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 9.0e-41 171.4 104 81.7
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.7e-39 167.2 116 74.1
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-34 150.6 91 76.9
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.1e-29 133.7 102 66.7
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 3.7e-26 122.9 67 89.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.5e-24 115.9 96 63.5
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 5.1e-20 102.4 60 80.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.4e-17 94.4 55 83.6
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 3.9e-12 76.3 60 68.3
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 2.6e-08 63.5 40 82.5


User provided reference genes

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