Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 5.0e-182 641.0 318 100.0
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.6e-124 448.7 318 73.0
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 1.6e-111 406.8 327 63.0
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 5.8e-106 388.3 385 56.9
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.0e-102 377.5 263 70.0
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.7e-102 376.7 225 80.9
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 8.7e-102 374.4 273 67.8
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.1e-99 365.9 264 67.8
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 6.4e-97 358.2 257 67.7
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 9.3e-96 354.4 247 70.4
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 4.6e-95 352.1 278 63.3
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 4.6e-95 352.1 265 64.2
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 3.0e-94 349.4 261 64.4
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 8.7e-94 347.8 263 64.3
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.5e-93 346.3 304 59.9
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 9.6e-93 344.4 241 70.1
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 4.8e-92 342.0 263 62.7
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 8.1e-92 341.3 248 66.1
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.8e-91 340.1 265 63.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 3.1e-91 339.3 247 67.2
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 5.3e-91 338.6 248 66.1
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 9.0e-91 337.8 249 65.5
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 9.0e-91 337.8 248 66.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.5e-90 337.0 278 62.2
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 2.0e-90 336.7 248 65.3
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 2.6e-90 336.3 248 65.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 2.6e-90 336.3 257 64.2
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.6e-90 336.3 248 66.9
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 3.4e-90 335.9 247 66.4
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 4.5e-90 335.5 243 68.7
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.8e-90 335.1 248 67.3
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 7.6e-90 334.7 244 66.4
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.3e-89 334.0 236 69.1
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 2.2e-89 333.2 248 66.9
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 2.2e-89 333.2 239 68.2
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 4.9e-89 332.0 239 66.1
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.1e-88 330.9 247 66.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 2.4e-88 329.7 224 69.2
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 2.4e-88 329.7 239 65.3
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 9.3e-88 327.8 248 63.3
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 1.6e-87 327.0 248 64.9
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.6e-87 327.0 256 62.5
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.6e-87 327.0 257 62.3
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.7e-87 326.2 271 60.5
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 4.6e-87 325.5 274 62.4
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 7.9e-87 324.7 245 64.5
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 7.9e-87 324.7 226 70.4
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.0e-86 324.3 247 64.8
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.0e-86 324.3 247 64.8
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.3e-86 323.2 244 63.9
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 3.0e-86 322.8 325 53.5
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 3.9e-86 322.4 248 62.9
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 3.9e-86 322.4 318 55.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.3e-85 319.3 241 65.6
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 9.6e-85 317.8 232 66.4
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.6e-84 317.0 248 61.3
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 2.1e-84 316.6 248 62.1
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 3.7e-84 315.8 238 63.4
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.8e-84 315.5 248 62.1
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 4.8e-84 315.5 248 62.1
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 1.1e-83 314.3 262 58.0
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 2.4e-83 313.2 256 59.4
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.2e-82 310.8 259 59.8
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 2.0e-82 310.1 262 57.6
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.6e-82 309.7 236 65.3
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 5.8e-82 308.5 236 65.3
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.5e-81 305.1 236 64.8
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.1e-80 304.3 258 57.4
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.9e-80 303.5 215 68.8
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.9e-80 303.5 224 65.6
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 5.5e-80 302.0 264 56.1
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.6e-79 300.4 264 56.1
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.1e-79 300.1 264 55.7
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.1e-79 300.1 235 63.4
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 6.0e-79 298.5 264 55.7
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 6.0e-79 298.5 264 55.7
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 7.9e-79 298.1 258 58.9
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 7.9e-79 298.1 228 63.2
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 1.5e-74 283.9 239 59.8
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 3.4e-74 282.7 225 63.1
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 7.7e-74 281.6 221 63.8
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 3.8e-73 279.3 196 69.4
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 4.2e-72 275.8 204 65.2
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 6.1e-71 271.9 226 57.1
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 3.3e-69 266.2 190 67.9
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 6.3e-68 261.9 182 74.7
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.4e-67 260.8 241 53.1
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.1e-67 259.6 264 56.1
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 5.3e-67 258.8 238 55.0
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 5.0e-65 252.3 247 49.8
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 5.5e-64 248.8 184 64.1
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 7.9e-63 245.0 251 48.6
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.8e-62 243.8 165 70.3
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.4e-59 234.2 248 52.4
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 3.8e-57 226.1 185 60.5
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 9.4e-56 221.5 181 62.4
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 6.1e-47 192.2 137 67.2
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 4.0e-46 189.5 222 43.2
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.0e-45 187.2 222 44.1
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.8e-43 180.6 133 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.0e-42 177.2 222 40.1
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 5.9e-42 175.6 134 59.0
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 2.8e-36 156.8 119 60.5
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.7e-33 147.5 108 65.7
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.1e-32 144.8 139 53.2
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 5.2e-30 136.0 227 32.2
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 3.7e-28 129.8 219 32.0
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.4e-27 127.1 217 33.2
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.4e-19 101.3 79 60.8
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.6e-18 97.8 225 29.3
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 3.5e-18 96.7 113 48.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.9e-17 93.2 204 27.0
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 2.3e-14 84.0 115 39.1
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 2.4e-11 73.9 124 37.9
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 2.4e-11 73.9 74 52.7
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 1.2e-10 71.6 223 24.2
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 4.6e-10 69.7 202 27.7
Actinidia02026 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.9e-08 64.3 95 42.1
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 4.3e-08 63.2 182 26.4
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.2e-07 61.6 229 24.5
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 2.1e-07 60.8 217 23.5
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.6e-07 60.1 226 23.0
ATR0377G002 Amborella trichopoda HOM05D003252 ORTHO05D003640 8.1e-07 58.9 202 25.7
Mapoly0152s0021 Marchantia polymorpha HOM05D006617 ORTHO05D003640 8.1e-07 58.9 208 23.6
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.4e-06 58.2 196 30.1
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 1.8e-06 57.8 220 25.9
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.3e-06 57.4 216 22.2
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.2e-06 56.2 205 22.4


User provided reference genes

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