Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.3e-136 490.0 285 100.0
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 4.8e-128 461.5 278 98.6
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.9e-88 329.3 253 78.3
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 7.3e-84 314.7 260 79.6
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-82 310.8 253 79.4
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.3e-77 293.1 253 69.2
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.9e-76 290.0 257 70.8
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.6e-75 285.8 253 68.0
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.9e-74 281.6 252 65.9
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.4e-73 279.3 253 72.3
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 5.8e-73 278.5 252 67.1
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 7.6e-73 278.1 253 67.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 7.6e-73 278.1 253 67.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.2e-72 276.6 253 68.8
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 4.9e-72 275.4 257 67.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.9e-71 273.5 252 67.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.4e-71 273.1 253 67.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 7.1e-71 271.6 254 64.6
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.6e-70 270.4 252 57.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 3.5e-70 269.2 254 65.0
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.6e-70 268.9 242 66.5
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.6e-70 268.9 258 64.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 7.8e-70 268.1 251 64.9
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.3e-69 267.3 257 63.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 3.0e-69 266.2 256 69.5
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 3.9e-69 265.8 251 65.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.1e-69 265.4 251 61.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 2.5e-68 263.1 274 61.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.5e-68 263.1 257 66.9
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 3.3e-68 262.7 260 69.6
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 5.6e-68 261.9 251 61.4
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.3e-67 260.8 252 62.3
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.6e-67 260.4 254 67.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.1e-67 260.0 252 66.3
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.1e-66 257.7 251 62.5
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.4e-66 256.5 256 69.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 3.1e-66 256.1 251 62.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 5.3e-66 255.4 252 55.2
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 6.9e-66 255.0 250 56.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.2e-65 254.2 250 65.2
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.5e-65 253.8 252 66.3
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.6e-65 253.1 251 61.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 7.6e-65 251.5 262 61.1
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 7.6e-65 251.5 253 63.6
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 7.6e-65 251.5 252 61.5
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 9.9e-65 251.1 252 54.4
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 9.9e-65 251.1 262 56.9
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.7e-64 250.4 252 65.5
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.2e-64 250.0 252 61.1
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.8e-64 249.2 251 58.2
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.8e-64 249.2 251 58.2
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 3.8e-64 249.2 257 63.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 6.4e-64 248.4 255 66.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 8.4e-64 248.1 253 62.1
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.1e-63 247.7 249 63.9
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-63 247.7 248 63.7
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.4e-63 247.3 252 64.7
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.9e-63 246.9 249 62.2
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.4e-63 246.5 254 54.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 2.4e-63 246.5 223 67.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.2e-63 246.1 253 59.7
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.2e-63 245.7 251 57.8
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.4e-63 245.4 248 60.9
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 7.1e-63 245.0 252 62.7
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 7.1e-63 245.0 252 58.7
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 9.3e-63 244.6 252 59.9
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.3e-63 244.6 249 63.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 9.3e-63 244.6 270 51.1
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.6e-62 243.8 252 61.5
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-62 243.8 249 63.5
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.6e-62 243.8 251 58.6
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.1e-62 243.4 252 58.7
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 2.7e-62 243.0 237 62.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 2.7e-62 243.0 254 68.9
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.6e-62 242.3 253 62.1
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 7.9e-62 241.5 175 76.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.0e-61 241.1 259 56.8
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.0e-61 241.1 242 59.1
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.3e-61 240.7 252 58.3
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-61 240.7 250 62.4
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.3e-61 240.0 242 59.5
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 3.0e-61 239.6 223 67.3
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 3.9e-61 239.2 250 60.4
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.7e-61 238.4 250 60.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.7e-61 238.4 250 60.8
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 6.7e-61 238.4 250 60.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 6.7e-61 238.4 272 51.1
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 8.7e-61 238.0 257 61.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 3.3e-60 236.1 259 56.0
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 5.6e-60 235.3 267 52.8
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.7e-59 232.6 256 59.0
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 4.8e-59 232.3 251 55.8
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.3e-58 228.8 254 58.7
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.5e-57 227.3 275 57.5
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.0e-57 226.9 258 51.6
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 2.6e-57 226.5 248 52.0
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 3.4e-57 226.1 279 47.7
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 4.5e-57 225.7 258 51.2
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 4.5e-57 225.7 284 48.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 7.6e-57 224.9 248 51.2
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 9.9e-57 224.6 281 48.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.7e-56 223.8 238 53.4
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.7e-56 223.8 249 56.6
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 6.4e-56 221.9 261 49.8
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 8.4e-56 221.5 242 52.1
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.1e-55 221.1 252 51.6
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.1e-55 221.1 255 56.1
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.9e-55 220.3 259 56.0
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.5e-55 219.9 246 61.8
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.2e-55 219.5 200 77.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.2e-55 219.5 249 57.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.2e-55 219.2 222 59.0
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.2e-55 219.2 267 50.9
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.2e-54 217.6 251 53.0
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.6e-54 217.2 286 47.6
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.1e-54 216.9 248 51.2
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 3.5e-54 216.1 267 49.4
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 6.0e-54 215.3 271 50.9
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.9e-54 214.9 286 47.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 7.9e-54 214.9 286 47.2
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.0e-53 214.5 250 52.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.9e-53 212.6 269 49.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 8.7e-53 211.5 256 49.6
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.1e-52 211.1 245 51.4
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.0e-50 201.4 222 57.7
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.2e-49 201.1 245 49.0
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.3e-48 197.6 246 52.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.6e-46 190.7 236 49.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.7e-46 189.9 234 54.7
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 3.0e-45 186.4 251 46.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.5e-44 183.3 241 46.1
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.3e-43 181.0 164 64.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.2e-43 180.3 174 54.0
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 5.3e-42 175.6 252 45.2
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.6e-41 173.3 255 44.3
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 7.7e-41 171.8 235 48.1
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.9e-37 159.5 141 74.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 6.7e-37 158.7 253 39.9
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.5e-36 156.8 226 43.4
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.7e-36 155.6 242 42.6
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-34 150.6 225 43.1
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.8e-34 150.6 225 43.1
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.4e-31 141.0 224 41.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.2e-31 139.4 171 48.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 7.2e-31 138.7 218 40.8
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.7e-30 136.7 247 35.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 3.6e-30 136.3 155 51.6
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 7.9e-30 135.2 252 38.1
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-29 134.4 207 57.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 8.8e-29 131.7 234 48.3
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.1e-26 124.8 204 39.7
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.1e-26 122.9 94 67.0
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-25 121.3 194 39.7
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.0e-24 118.2 223 39.5
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.4e-23 114.4 127 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.6e-22 109.8 150 43.3
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.6e-22 109.8 226 34.1
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 8.0e-22 108.6 279 33.7
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.0e-21 108.2 144 42.4
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 5.2e-21 105.9 106 58.5
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-20 104.0 107 59.8
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.4e-20 102.8 225 35.6
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.3e-19 101.3 120 50.8
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 7.0e-18 95.5 131 44.3
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.7e-16 90.9 79 58.2
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 8.5e-16 88.6 112 45.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.3e-13 80.5 81 54.3
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.7e-08 64.3 123 37.4
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.9e-07 60.8 53 54.7
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 4.2e-07 59.7 93 40.9
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 5.5e-07 59.3 81 45.7


User provided reference genes

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