Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023333 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001267 0.0e+00 2243.0 1181 100.0
CSS0039968 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001267 0.0e+00 2161.3 1180 97.6
Actinidia35043 Actinidia chinensis HOM05D000874 ORTHO05D001267 5.4e-282 974.9 1174 54.9
Actinidia04813 Actinidia chinensis HOM05D000874 ORTHO05D001267 4.3e-271 938.7 1103 55.6
Dinv17430 Davidia involucrata HOM05D000874 ORTHO05D001267 1.1e-269 934.1 1204 52.0
Rhsim08G0144400 Rhododendron simsii HOM05D000874 ORTHO05D001267 8.5e-211 738.4 1199 47.0
GSVIVG01008114001 Vitis vinifera HOM05D000874 ORTHO05D001267 2.4e-189 667.2 1093 47.0
vmacro17620 Vaccinium macrocarpon HOM05D000874 ORTHO05D001267 3.4e-159 567.0 1149 41.2
Haze_07744 Corylus avellana HOM05D000874 ORTHO05D001267 2.0e-151 541.2 1096 41.0
Actinidia16140 Actinidia chinensis HOM05D000874 ORTHO05D001267 4.9e-150 536.6 518 59.3
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 1.0e-147 528.9 1186 36.4
vmacro16489 Vaccinium macrocarpon HOM05D000874 ORTHO05D001267 1.1e-146 525.4 863 47.9
QL10p019931 Quercus lobata HOM05D000874 ORTHO05D001267 2.8e-145 520.8 1176 38.9
Hma1.2p1_0060F.1_g032960 Hydrangea macrophylla HOM05D000874 ORTHO05D001267 1.4e-141 508.4 1057 41.2
Prupe.5G206700 Prunus persica HOM05D000874 ORTHO05D001267 1.5e-138 498.4 1213 35.6
Lj5A134T72 Lonicera japonica HOM05D000874 ORTHO05D001267 5.8e-127 459.9 1056 39.6
Manes.14G086800 Manihot esculenta HOM05D000874 ORTHO05D001267 8.7e-123 446.0 1188 36.4
RcHm_v2.0_Chr7g0183291 Rosa chinensis HOM05D000874 ORTHO05D001267 1.8e-120 438.3 1219 34.6
Manes.06G083000 Manihot esculenta HOM05D000874 ORTHO05D001267 3.9e-115 420.6 1102 37.1
MD14G1213100 Malus domestica HOM05D000874 ORTHO05D001267 1.5e-114 418.7 946 37.5
Nn4g23458 Nelumbo nucifera HOM05D000874 ORTHO05D001267 2.2e-113 414.8 1290 34.7
Oeu017180.1 Olea europaea HOM05D000874 ORTHO05D001267 5.9e-111 406.8 1178 35.0
CiPaw.11G055300 Carya illinoinensis HOM05D000874 ORTHO05D001267 1.0e-110 406.0 989 39.2
FAN08G0155 Fragaria x ananassa HOM05D000874 ORTHO05D001267 1.5e-103 382.1 1199 33.4
FAN13G1125 Fragaria x ananassa HOM05D000874 ORTHO05D001049 2.0e-103 381.7 1218 33.3
FvH4_5g13670 Fragaria vesca HOM05D000874 ORTHO05D001267 3.4e-103 380.9 1203 33.7
TWI60G1583 Tripterygium wilfordii HOM05D000874 ORTHO05D001267 3.8e-102 377.5 1187 35.7
Glyma.04G160800 Glycine max HOM05D000874 ORTHO05D001267 2.5e-101 374.8 1216 33.1
VMungo1309G3138 Vigna mungo HOM05D000874 ORTHO05D001267 2.5e-101 374.8 1108 32.8
Glyma.06G204600 Glycine max HOM05D000874 ORTHO05D001267 7.2e-101 373.2 1119 34.0
FAN18G0264 Fragaria x ananassa HOM05D000874 ORTHO05D001267 2.7e-100 371.3 1197 32.9
Thecc.03G104300 Theobroma cacao HOM05D000874 ORTHO05D001267 7.4e-98 363.2 1211 34.8
Phvul.009G202700 Phaseolus vulgaris HOM05D000874 ORTHO05D001267 1.8e-96 358.6 1102 32.8
EL10Ac5g11157 Beta vulgaris HOM05D000874 ORTHO05D001267 3.8e-94 350.9 1025 33.7
Cc00_g03520 Coffea canephora HOM05D000874 ORTHO05D001267 6.5e-94 350.1 1168 31.1
Lj1g0025338 Lotus japonicus HOM05D000874 ORTHO05D001267 2.6e-90 338.2 1110 33.7
Ciclev10018493m.g Citrus clementina HOM05D000874 ORTHO05D001267 1.3e-86 325.9 1115 31.7
Duzib068G0415 Durio zibethinus HOM05D000874 ORTHO05D003941 8.0e-84 316.6 1209 32.9
Medtr2g060650 Medicago truncatula HOM05D000874 ORTHO05D001267 2.6e-82 311.6 1199 31.7
AUR62039650 Chenopodium quinoa HOM05D000874 ORTHO05D001267 3.5e-79 301.2 1024 33.5
ClCG06G015550 Citrullus lanatus HOM05D000874 ORTHO05D001267 7.7e-79 300.1 1195 31.2
Psat4g051080 Pisum sativum HOM05D000874 ORTHO05D001267 1.0e-78 299.7 1234 31.3
MSTRG.22953 Avicennia marina HOM05D000874 ORTHO05D001267 1.1e-77 296.2 1176 30.8
Peaxi162Scf00013g00075 Petunia axillaris HOM05D000874 ORTHO05D001267 7.2e-77 293.5 1060 33.2
DCAR_023163 Daucus carota HOM05D000874 ORTHO05D001267 1.8e-75 288.9 1046 32.5
CsaV3_1G003050 Cucumis sativus L. HOM05D000874 ORTHO05D001267 9.8e-74 283.1 1095 32.3
arahy.Tifrunner.gnm1.ann1.A58RJ7 Arachis hypogaea HOM05D000874 ORTHO05D001267 2.8e-73 281.6 1198 30.2
Actinidia16141 Actinidia chinensis HOM05D000874 ORTHO05D001267 3.7e-73 281.2 462 49.4
Solyc06g069440.3 Solanum lycopersicum HOM05D000874 ORTHO05D001267 8.3e-73 280.0 1090 30.7
Ca_02921_v3 Cicer arietinum L. HOM05D000874 ORTHO05D001267 1.2e-71 276.2 1078 32.6
arahy.Tifrunner.gnm1.ann1.GR9NQC Arachis hypogaea HOM05D000874 ORTHO05D001267 2.7e-71 275.0 1192 30.0
Nitab4.5_0001328g0070 Nicotiana tabacum HOM05D000874 ORTHO05D001267 7.7e-71 273.5 1060 33.6
CANSAT80G1925 Cannabis sativa HOM05D000874 ORTHO05D001267 2.3e-70 271.9 1187 31.3
Sc12g0007060 Simmondsia chinensis HOM05D000874 ORTHO05D001267 2.8e-68 265.0 1054 31.9
PGSC0003DMG401004066 Solanum tuberosum HOM05D000874 ORTHO05D001267 1.0e-67 263.1 1053 31.6
COL.COLO4_24322 Corchorus olitorius HOM05D000874 ORTHO05D001267 2.0e-66 258.8 1017 33.0
Gohir.A03G070700 Gossypium hirsutum HOM05D000874 ORTHO05D001267 9.8e-66 256.5 1118 30.3
Sopen06g026730 Solanum pennellii HOM05D000874 ORTHO05D001267 9.8e-66 256.5 1034 31.4
AUR62021535 Chenopodium quinoa HOM05D000874 ORTHO05D001267 1.7e-65 255.8 1030 32.5
Sed0005310 Sechium edule HOM05D000874 ORTHO05D001267 6.3e-65 253.8 1284 29.4
TAR629G0267 Trochodendron aralioides HOM05D000874 ORTHO05D001267 1.8e-64 252.3 470 37.7
CSS0036101 Camellia sinensis var. sinensis HOM05D000874 ORTHO05D001267 3.1e-64 251.5 177 74.6
Gorai.003G101900 Gossypium raimondii HOM05D000874 ORTHO05D001267 2.0e-63 248.8 1225 30.7
SalBow5G5238 Salvia bowleyana HOM05D000874 ORTHO05D001267 5.6e-61 240.7 1182 27.7
TAR622G0856 Trochodendron aralioides HOM05D000874 ORTHO05D001267 3.6e-60 238.0 483 37.5
Nitab4.5_0007645g0020 Nicotiana tabacum HOM05D000874 ORTHO05D001267 6.1e-60 237.3 774 32.4
Aqoxy3G03671 Aquilegia oxysepala HOM05D000874 ORTHO05D001267 1.8e-59 235.7 1113 30.6
CAN.G587.51 Capsicum annuum HOM05D000874 ORTHO05D000105 8.9e-59 233.4 1057 30.1
Lalb_Chr05g0229601 Lupinus albus HOM05D000874 ORTHO05D001267 2.0e-58 232.3 920 32.4
Gohir.D03G097100 Gossypium hirsutum HOM05D000874 ORTHO05D001267 5.8e-58 230.7 1086 31.8
Eucgr.B00614 Eucalyptus grandis HOM05D000874 ORTHO05D001267 3.0e-54 218.4 1126 30.0
Atru.chr9.525 Acer truncatum HOM05D000874 ORTHO05D001267 4.3e-53 214.5 656 35.5
Atru.chr9.526 Acer truncatum HOM05D000874 ORTHO05D001267 4.7e-52 211.1 306 45.1
TAR629G2811 Trochodendron aralioides HOM05D000874 ORTHO05D001267 5.4e-48 197.6 246 50.8
Actinidia18982 Actinidia chinensis HOM05D000874 ORTHO05D001267 3.9e-46 191.4 421 35.9
Cpa.g.sc94.72 Carica papaya HOM05D000874 ORTHO05D001267 6.2e-44 184.1 539 33.8
Actinidia16138 Actinidia chinensis HOM05D000874 ORTHO05D001267 1.3e-41 176.4 283 44.5
Lalb_Chr16g0391661 Lupinus albus HOM05D000874 ORTHO05D001267 8.3e-41 173.7 422 36.0
MELO3C017234.2 Cucumis melo HOM05D000874 ORTHO05D001267 4.0e-35 154.8 235 44.7
MELO3C017235.2 Cucumis melo HOM05D000874 ORTHO05D001267 1.7e-33 149.4 797 28.7
Migut.I00513 Erythranthe guttata HOM05D000874 ORTHO05D001267 4.2e-32 144.8 852 29.9
Potri.006G227200 Populus trichocarpa HOM05D000874 ORTHO05D001267 2.3e-30 139.0 215 45.1
PGR083G2399 Punica granatum HOM05D000874 ORTHO05D001267 3.6e-28 131.7 1221 25.1
Potri.018G051900 Populus trichocarpa HOM05D000874 ORTHO05D001267 1.8e-27 129.4 213 42.3
Sabra06G0175800 Salix brachista HOM05D000874 ORTHO05D001267 2.4e-27 129.0 213 44.1
PSO648G0103 Papaver somniferum HOM05D000874 ORTHO05D001267 1.2e-26 126.7 788 29.3
Sabra18G0048000 Salix brachista HOM05D000874 ORTHO05D001267 2.2e-25 122.5 213 40.8
SGA_v2.0_scaffold28G11741 Striga asiatica HOM05D000874 ORTHO05D001267 2.9e-25 122.1 980 27.0
AUR62039647 Chenopodium quinoa HOM05D000874 ORTHO05D001267 2.3e-22 112.5 296 35.1
PSO339G4599 Papaver somniferum HOM05D000874 ORTHO05D001267 5.1e-22 111.3 848 27.5
HPP92_007834 Vanilla planifolia HOM05D000874 ORTHO05D001267 8.7e-22 110.5 1148 25.7
ATR0177G006 Amborella trichopoda HOM05D000874 ORTHO05D001267 1.9e-21 109.4 1064 28.5
TWI60G1333 Tripterygium wilfordii HOM05D000874 ORTHO05D001267 5.6e-21 107.8 173 43.4
Nn3g17474 Nelumbo nucifera HOM05D000874 ORTHO05D001267 6.9e-19 100.9 270 37.8
Psat4g190920 Pisum sativum HOM05D000487 ORTHO05D001267 1.3e-17 96.7 134 47.8
Actinidia16139 Actinidia chinensis HOM05D000874 ORTHO05D001267 2.2e-17 95.9 78 60.3
TWI60G0797 Tripterygium wilfordii HOM05D000874 ORTHO05D001267 2.2e-17 95.9 345 29.9
ECA246G3190 Erigeron canadensis HOM05D000874 ORTHO05D001267 4.6e-15 88.2 203 36.5
HanXRQChr08g0230421 Helianthus annuus HOM05D000874 ORTHO05D001267 3.9e-14 85.1 185 35.7
Duzib205G0866 Durio zibethinus HOM05D000874 ORTHO05D001267 1.5e-13 83.2 119 47.1
Actinidia18983 Actinidia chinensis HOM05D000874 ORTHO05D001267 9.6e-13 80.5 76 59.2
Eucgr.B00612 Eucalyptus grandis HOM05D000874 ORTHO05D001049 2.4e-11 75.9 124 43.5
Lsat_1_v5_gn_5_23020 Lactuca sativa HOM05D000874 ORTHO05D001267 3.4e-10 72.0 318 36.8
Eucgr.B00613 Eucalyptus grandis HOM05D000874 ORTHO05D001049 4.5e-10 71.6 123 41.5
Lalb_Chr16g0391651 Lupinus albus HOM05D000874 ORTHO05D001267 3.8e-09 68.6 235 37.4
unitig_26.g9669 Utricularia gibba HOM05D000874 ORTHO05D001267 4.9e-09 68.2 153 34.6
Psat1g148840 Pisum sativum HOM05D002270 ORTHO05D012184 1.1e-08 67.0 106 40.6
Nitab4.5_0007645g0030 Nicotiana tabacum HOM05D000874 ORTHO05D001267 6.7e-06 57.8 230 27.0
SEGI_24030 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 8.7e-06 57.4 253 39.1


User provided reference genes

Program Settings