Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 6.2e-23 110.5 84 100.0
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 5.8e-21 104.0 53 98.1
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 2.2e-20 102.1 84 92.9
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 3.7e-20 101.3 53 98.1
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 3.7e-20 101.3 84 94.0
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 4.9e-20 100.9 53 96.2
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 4.9e-20 100.9 53 96.2
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 6.4e-20 100.5 53 98.1
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 6.4e-20 100.5 53 96.2
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 6.4e-20 100.5 53 94.3
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 8.3e-20 100.1 53 96.2
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 8.3e-20 100.1 53 96.2
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 1.1e-19 99.8 53 94.3
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 1.4e-19 99.4 53 94.3
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.4e-19 99.4 53 94.3
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.4e-19 99.4 53 92.5
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 1.9e-19 99.0 53 96.2
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.9e-19 99.0 53 92.5
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.9e-19 99.0 53 94.3
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 1.9e-19 99.0 53 94.3
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.9e-19 99.0 84 94.0
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 2.4e-19 98.6 53 94.3
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 2.4e-19 98.6 53 92.5
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 2.4e-19 98.6 53 92.5
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.4e-19 98.6 53 94.3
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 3.2e-19 98.2 53 94.3
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 3.2e-19 98.2 53 92.5
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 3.2e-19 98.2 53 92.5
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 5.4e-19 97.4 53 92.5
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 5.4e-19 97.4 53 92.5
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 7.1e-19 97.1 84 90.5
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 94.3
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 92.5
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 92.5
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 7.1e-19 97.1 53 90.6
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 9.2e-19 96.7 53 92.5
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 9.2e-19 96.7 53 92.5
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 90.6
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 90.6
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 92.5
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 88.7
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 90.6
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.2e-18 96.3 53 92.5
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 1.6e-18 95.9 53 92.5
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.6e-18 95.9 53 92.5
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 1.6e-18 95.9 53 88.7
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 2.1e-18 95.5 53 88.7
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 2.1e-18 95.5 53 92.5
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 3.5e-18 94.7 84 90.5
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 3.5e-18 94.7 53 88.7
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 3.5e-18 94.7 53 88.7
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 4.6e-18 94.4 53 88.7
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 4.6e-18 94.4 53 92.5
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.0e-17 93.2 53 90.6
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 1.3e-17 92.8 53 88.7
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 1.3e-17 92.8 53 88.7
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 1.3e-17 92.8 53 88.7
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 1.7e-17 92.4 53 86.8
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 2.3e-17 92.0 53 88.7
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 3.0e-17 91.7 53 90.6
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 3.9e-17 91.3 53 90.6
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 8.6e-17 90.1 53 86.8
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 2.5e-16 88.6 53 86.8
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 3.3e-16 88.2 53 86.8
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 3.3e-16 88.2 53 86.8
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 7.3e-16 87.0 53 83.0
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 9.5e-16 86.7 53 84.9
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 9.5e-16 86.7 53 84.9
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 2.1e-15 85.5 53 83.0
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.8e-15 85.1 52 80.8
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 3.1e-14 81.6 44 93.2
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 7.6e-13 77.0 43 88.4
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 4.9e-12 74.3 39 97.4
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 9.2e-11 70.1 37 91.9
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 8.7e-09 63.5 43 76.7
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-08 63.2 53 64.2
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-08 63.2 53 64.2
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 4.3e-08 61.2 54 61.1


User provided reference genes

Program Settings