Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 9.8e-35 149.4 69 100.0
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.9e-33 145.2 69 97.1
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 1.3e-18 95.9 47 93.6
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 2.9e-18 94.7 66 69.7
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 3.8e-18 94.4 66 69.7
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.8e-18 94.4 66 69.7
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 8.4e-18 93.2 48 85.4
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 1.9e-17 92.0 47 85.1
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.9e-17 92.0 66 68.2
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 4.2e-17 90.9 66 66.7
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 4.2e-17 90.9 47 85.1
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 5.4e-17 90.5 66 65.2
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.2e-16 89.4 47 87.2
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 1.6e-16 89.0 66 66.7
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.6e-16 89.0 66 65.2
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.1e-16 88.6 47 83.0
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.7e-16 88.2 47 83.0
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 2.7e-16 88.2 47 85.1
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 3.5e-16 87.8 47 83.0
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 3.5e-16 87.8 53 75.5
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 4.6e-16 87.4 53 71.7
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 4.6e-16 87.4 47 80.9
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 6.0e-16 87.0 47 80.9
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 7.8e-16 86.7 66 63.6
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.0e-15 86.3 53 69.8
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 1.3e-15 85.9 47 78.7
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.3e-15 85.9 66 63.6
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.3e-15 85.9 53 67.9
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 1.7e-15 85.5 53 69.8
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.7e-15 85.5 47 78.7
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.7e-15 85.5 47 78.7
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 1.7e-15 85.5 47 80.9
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.3e-15 85.1 66 62.1
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 2.3e-15 85.1 53 75.5
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 3.0e-15 84.7 47 83.0
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 3.0e-15 84.7 69 62.3
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 3.0e-15 84.7 66 63.6
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 3.9e-15 84.3 47 76.6
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 3.9e-15 84.3 47 80.9
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 3.9e-15 84.3 47 80.9
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 5.1e-15 84.0 66 63.6
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 5.1e-15 84.0 47 76.6
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 5.1e-15 84.0 47 76.6
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 5.1e-15 84.0 47 76.6
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 6.6e-15 83.6 50 72.0
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 6.6e-15 83.6 47 74.5
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 6.6e-15 83.6 47 76.6
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 6.6e-15 83.6 53 69.8
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 8.7e-15 83.2 50 72.0
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 8.7e-15 83.2 53 71.7
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 8.7e-15 83.2 47 80.9
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.5e-14 82.4 47 80.9
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.9e-14 82.0 53 69.8
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 1.9e-14 82.0 53 67.9
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 1.9e-14 82.0 53 67.9
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 1.9e-14 82.0 47 78.7
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 1.9e-14 82.0 47 76.6
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.5e-14 81.6 50 70.0
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 2.5e-14 81.6 53 67.9
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 4.3e-14 80.9 50 68.0
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 5.6e-14 80.5 50 68.0
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 5.6e-14 80.5 53 69.8
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 7.3e-14 80.1 50 74.0
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 7.3e-14 80.1 46 76.1
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 9.6e-14 79.7 50 68.0
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.3e-13 79.3 47 72.3
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 1.3e-13 79.3 46 73.9
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.6e-13 79.0 53 66.0
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 2.8e-13 78.2 46 71.7
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 2.8e-13 78.2 67 62.7
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 3.6e-13 77.8 47 70.2
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 3.6e-13 77.8 67 62.7
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 3.6e-13 77.8 47 72.3
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 8.1e-13 76.6 47 74.5
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.1e-12 76.3 47 74.5
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 1.8e-12 75.5 66 57.6
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 1.8e-12 75.5 46 69.6
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 1.8e-12 75.5 47 68.1
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 4.0e-12 74.3 46 71.7
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 5.3e-12 73.9 58 56.9
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 5.3e-12 73.9 62 59.7
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 9.0e-12 73.2 47 66.0
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 9.0e-12 73.2 47 66.0
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.2e-11 72.8 47 66.0
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 1.2e-11 72.8 49 69.4
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 1.2e-11 72.8 67 59.7
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 2.6e-11 71.6 48 72.9
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 5.8e-11 70.5 47 68.1
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 5.8e-11 70.5 46 73.9
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 7.6e-11 70.1 53 60.4
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 9.9e-11 69.7 60 56.7
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 1.3e-10 69.3 50 60.0
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 3.8e-10 67.8 48 64.6
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 6.4e-10 67.0 44 70.5
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 6.4e-10 67.0 49 65.3
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 6.4e-10 67.0 53 58.5
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.9e-09 65.5 47 61.7
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 4.2e-09 64.3 62 50.0
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.4e-09 63.9 47 59.6
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 9.3e-09 63.2 46 60.9
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 2.7e-08 61.6 45 60.0
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 2.7e-08 61.6 45 60.0
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 4.6e-08 60.8 47 55.3
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 6.0e-08 60.5 45 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 1.0e-07 59.7 41 63.4
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 3.0e-07 58.2 45 55.6
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 3.0e-07 58.2 45 57.8
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 5.1e-07 57.4 50 48.0
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 5.6e-06 53.9 41 51.2


User provided reference genes

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