Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.9e-93 344.0 175 100.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.6e-84 315.5 191 87.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.3e-72 275.8 191 75.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.5e-71 273.1 187 75.4
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.0e-71 272.7 189 76.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.4e-71 271.6 188 75.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.7e-71 271.2 187 75.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 5.7e-71 271.2 190 74.7
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.3e-70 270.0 185 75.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.3e-70 270.0 187 75.4
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.2e-70 267.3 187 75.4
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.1e-69 266.9 185 75.1
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.8e-69 266.2 185 74.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.4e-69 265.8 190 73.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.4e-69 265.8 190 73.2
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.4e-69 265.8 190 73.2
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 4.1e-69 265.0 185 73.5
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 4.1e-69 265.0 185 73.5
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.1e-69 265.0 188 73.4
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 7.0e-69 264.2 191 73.3
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 9.1e-69 263.8 190 73.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 9.1e-69 263.8 187 73.3
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 9.1e-69 263.8 187 73.3
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.0e-68 262.7 185 74.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.0e-68 262.7 188 74.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.6e-68 262.3 191 72.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.5e-68 261.9 187 72.2
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.5e-68 261.5 186 74.2
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 4.5e-68 261.5 190 73.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.5e-68 261.5 187 72.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.5e-68 261.5 190 72.6
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.9e-68 261.2 187 72.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 5.9e-68 261.2 191 72.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.9e-68 261.2 185 73.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.3e-67 260.0 187 72.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.2e-67 259.2 187 70.6
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.9e-67 258.8 187 72.2
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 3.8e-67 258.5 189 71.4
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 3.8e-67 258.5 190 72.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.0e-67 258.1 188 71.8
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.5e-67 257.7 187 71.7
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 8.5e-67 257.3 185 71.9
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-66 256.9 189 71.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-66 256.9 189 71.4
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-66 256.5 188 71.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.5e-66 256.5 185 74.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.5e-66 256.5 189 70.9
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.5e-66 255.8 185 74.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 2.5e-66 255.8 187 71.7
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.5e-66 255.8 189 70.9
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.5e-66 254.6 190 70.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 9.4e-66 253.8 187 70.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 9.4e-66 253.8 186 70.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-65 253.4 186 73.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.2e-65 253.4 185 70.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.6e-65 253.1 187 69.5
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.6e-65 253.1 189 68.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.1e-65 252.7 187 71.1
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.1e-65 252.7 185 71.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.6e-65 251.9 187 71.7
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 3.6e-65 251.9 184 70.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 4.7e-65 251.5 191 68.6
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 6.1e-65 251.1 185 70.3
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 8.0e-65 250.8 185 71.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.0e-65 250.8 217 65.0
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.8e-64 249.6 188 69.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 2.3e-64 249.2 191 67.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.3e-64 249.2 191 69.1
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 3.0e-64 248.8 187 69.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.0e-64 248.8 187 71.1
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 5.2e-64 248.1 189 68.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.7e-64 247.7 184 71.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.1e-63 246.9 192 67.2
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.5e-63 246.5 191 68.1
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.3e-63 245.4 185 69.2
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.4e-63 244.2 185 69.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 9.7e-63 243.8 185 69.2
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 9.7e-63 243.8 187 68.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.7e-62 243.0 185 69.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.2e-62 242.7 185 68.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.8e-62 242.3 187 67.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.7e-62 241.9 185 68.1
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 3.7e-62 241.9 185 68.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 4.8e-62 241.5 170 75.3
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 6.3e-62 241.1 185 68.6
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 8.2e-62 240.7 185 68.1
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 8.2e-62 240.7 185 67.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.4e-61 240.0 185 67.6
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.4e-61 240.0 191 68.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-61 239.6 185 68.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-61 239.6 185 68.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.1e-61 238.8 163 74.8
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-61 238.8 185 68.1
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 4.1e-61 238.4 185 68.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.1e-61 238.4 185 68.1
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 9.1e-61 237.3 185 67.6
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 9.1e-61 237.3 185 67.6
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 9.1e-61 237.3 185 67.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.0e-60 236.1 185 67.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-60 236.1 185 67.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.9e-60 234.6 185 67.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.0e-59 233.8 177 67.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.0e-59 233.8 184 67.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.0e-59 233.8 185 66.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.0e-59 233.8 187 65.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-59 233.4 190 64.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.3e-59 233.4 190 64.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.8e-59 231.9 182 67.0
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.5e-59 230.7 187 65.8
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 8.5e-59 230.7 185 66.5
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-58 229.9 188 64.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.5e-58 229.9 186 67.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.9e-58 229.6 188 66.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.2e-58 227.6 188 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 3.6e-57 225.3 188 62.2
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-57 225.3 185 64.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.1e-57 224.6 186 62.9
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.8e-56 223.0 182 63.7
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.8e-56 223.0 185 64.3
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.2e-54 216.1 193 63.2
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.4e-53 212.6 176 63.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.5e-52 208.4 170 64.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.0e-51 207.2 185 62.7
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.7e-51 206.5 166 65.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.7e-49 199.1 195 55.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.8e-48 196.4 188 56.4
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.2e-47 193.7 187 55.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.4e-47 192.2 187 56.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.7e-46 189.9 185 57.8
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.8e-46 189.1 175 60.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.0e-44 183.0 188 54.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-44 181.0 135 68.9
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 6.6e-43 177.9 150 65.3
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.4e-40 170.2 124 70.2
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 3.4e-39 165.6 123 69.9
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.4e-38 161.4 132 65.9
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-33 147.1 131 61.8
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.3e-32 142.9 131 61.8
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-31 139.0 113 66.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.8e-31 138.3 95 74.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.9e-30 135.2 110 65.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.1e-29 132.1 140 54.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-27 126.7 168 44.0
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.6e-27 124.8 106 67.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.4e-23 112.5 57 89.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.6e-20 102.1 71 73.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.5e-18 96.3 93 55.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-16 90.1 68 72.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.8e-16 90.1 63 73.0
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.7e-14 82.4 68 64.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.9e-14 82.0 145 34.5
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 8.4e-14 81.3 90 51.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 8.4e-14 81.3 61 72.1
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-13 80.1 64 67.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.3e-11 73.9 46 82.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-10 70.5 40 77.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-10 70.5 40 77.5
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.5e-10 69.7 36 88.9
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.5e-10 69.7 63 57.1
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.8e-09 66.2 62 56.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.6e-07 59.7 147 32.7


User provided reference genes

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