Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.4e-96 356.3 181 100.0
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.4e-56 223.4 182 66.5
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 3.8e-54 215.3 182 62.6
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 6.5e-54 214.5 182 62.6
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.6e-52 209.9 176 64.8
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 6.1e-52 208.0 182 59.9
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.0e-51 207.2 179 62.6
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.4e-51 206.8 182 62.1
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 3.0e-51 205.7 182 62.1
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 3.0e-51 205.7 182 62.1
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 4.0e-51 205.3 182 59.9
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 4.0e-51 205.3 182 61.0
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.0e-51 205.3 182 61.0
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 8.8e-51 204.1 182 60.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.0e-50 203.0 182 60.4
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.6e-50 202.6 182 61.5
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 2.6e-50 202.6 182 61.0
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 2.6e-50 202.6 182 62.1
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 2.6e-50 202.6 182 58.2
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 2.6e-50 202.6 179 59.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 5.7e-50 201.4 179 60.3
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 5.7e-50 201.4 182 61.0
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 7.5e-50 201.1 182 59.9
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 1.3e-49 200.3 182 58.8
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.7e-49 199.9 182 59.9
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 2.2e-49 199.5 182 58.8
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 2.8e-49 199.1 182 58.8
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 3.7e-49 198.7 182 60.4
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 8.3e-49 197.6 182 58.2
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.1e-48 197.2 182 58.2
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 1.4e-48 196.8 182 58.2
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.4e-48 196.8 182 58.2
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.8e-48 196.4 182 58.8
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.4e-48 196.1 185 58.9
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 3.1e-48 195.7 182 57.1
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 4.1e-48 195.3 182 59.3
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 5.4e-48 194.9 182 57.7
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 5.4e-48 194.9 182 57.7
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 1.2e-47 193.7 182 57.1
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.6e-47 193.4 182 58.8
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.6e-47 193.4 182 58.8
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 1.6e-47 193.4 182 59.3
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 2.0e-47 193.0 184 58.2
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 2.7e-47 192.6 184 57.6
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.7e-47 192.6 185 56.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.7e-47 192.6 184 56.5
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 3.5e-47 192.2 183 55.7
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 3.5e-47 192.2 185 57.8
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 3.5e-47 192.2 185 57.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 4.5e-47 191.8 184 56.5
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 5.9e-47 191.4 179 59.2
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 5.9e-47 191.4 184 56.0
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.9e-47 191.4 182 58.2
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 7.7e-47 191.0 184 58.7
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 1.0e-46 190.7 184 58.2
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.0e-46 190.7 182 58.2
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 1.0e-46 190.7 184 58.2
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.3e-46 190.3 182 56.0
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.3e-46 190.3 187 57.8
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.3e-46 190.3 185 57.3
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 1.3e-46 190.3 185 56.8
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 2.3e-46 189.5 186 55.4
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.9e-46 189.1 182 54.9
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 2.9e-46 189.1 182 54.9
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 2.9e-46 189.1 185 57.8
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.9e-46 189.1 185 57.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.9e-46 189.1 182 56.6
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 3.8e-46 188.7 184 56.5
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 8.6e-46 187.6 184 56.5
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 8.6e-46 187.6 182 56.6
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 8.6e-46 187.6 185 56.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 8.6e-46 187.6 184 56.5
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.1e-45 187.2 184 57.1
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.5e-45 186.8 184 56.5
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.5e-45 186.8 182 54.9
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.9e-45 186.4 182 56.0
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.5e-45 186.0 182 53.8
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.2e-45 185.3 182 53.8
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 4.2e-45 185.3 182 56.6
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.2e-45 184.5 184 55.4
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 7.2e-45 184.5 185 56.2
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 9.5e-45 184.1 182 53.8
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 9.5e-45 184.1 182 54.4
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.2e-44 183.7 184 56.0
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.2e-44 183.7 187 54.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.2e-44 183.7 180 55.0
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 2.1e-44 183.0 184 56.0
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 2.1e-44 183.0 184 56.0
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.1e-44 183.0 176 55.7
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 2.1e-44 183.0 183 54.6
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.8e-44 182.6 184 56.0
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 2.8e-44 182.6 184 55.4
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 3.6e-44 182.2 184 54.3
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.6e-44 182.2 184 55.4
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.6e-44 182.2 185 55.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 6.1e-44 181.4 178 55.6
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 6.1e-44 181.4 184 54.3
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 8.0e-44 181.0 176 55.1
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 8.0e-44 181.0 184 53.8
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-43 180.6 184 54.3
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-43 180.6 184 54.3
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.0e-43 180.6 184 54.3
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 3.0e-43 179.1 186 52.7
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 5.2e-43 178.3 174 56.3
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 6.8e-43 177.9 184 53.8
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 8.9e-43 177.6 184 53.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.5e-42 176.8 184 53.3
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 7.5e-42 174.5 171 56.7
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 9.8e-42 174.1 184 51.1
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.9e-38 162.5 195 46.2
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 7.3e-37 157.9 181 48.1
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.1e-36 156.4 179 48.6
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 4.0e-35 152.1 115 67.0
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.8e-35 151.4 180 49.4
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.4e-34 149.1 181 47.0
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 7.0e-32 141.4 121 62.0
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.3e-29 132.5 178 39.9
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.3e-29 132.1 179 39.7
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 5.6e-29 131.7 110 66.4
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.1e-28 129.8 179 39.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 8.0e-28 127.9 181 40.9
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 4.9e-25 118.6 174 40.2
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 6.4e-25 118.2 178 38.8
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 3.9e-22 109.0 120 49.2
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.4e-19 100.5 113 46.9
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 6.4e-17 91.7 177 35.0
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 8.3e-17 91.3 177 38.4
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 3.5e-15 85.9 108 44.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 4.3e-13 79.0 58 69.0
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 4.3e-13 79.0 174 29.3
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 3.5e-07 59.3 177 24.3


User provided reference genes

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