Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023296 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D033928 5.9e-28 126.7 60 100.0
CSS0024919 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D033928 1.7e-27 125.2 60 98.3
EL10Ac6g15493 Beta vulgaris HOM05D000372 ORTHO05D004502 6.2e-09 63.5 32 90.6
Nitab4.5_0001892g0050 Nicotiana tabacum HOM05D000372 ORTHO05D004502 5.2e-08 60.5 35 80.0
GSVIVG01025920001 Vitis vinifera HOM05D000372 ORTHO05D033928 5.2e-08 60.5 34 85.3
GSVIVG01036800001 Vitis vinifera HOM05D000372 ORTHO05D004502 8.9e-08 59.7 31 90.3
Actinidia22958 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
Actinidia26542 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
CSS0039853 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
CANSAT25G3275 Cannabis sativa HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
Cc07_g10990 Coffea canephora HOM05D000372 ORTHO05D004502 1.2e-07 59.3 43 74.4
FvH4_1g11530 Fragaria vesca HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
FAN19G2794 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
FAN23G0866 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
FAN26G1228 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
FAN28G0543 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.2e-07 59.3 29 100.0
Rhsim10G0210600 Rhododendron simsii HOM05D000372 ORTHO05D004502 2.0e-07 58.5 29 96.6
Dinv40109 Davidia involucrata HOM05D000372 ORTHO05D004502 2.6e-07 58.2 29 96.6
Hma1.2p1_0869F.1_g230760 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 2.6e-07 58.2 29 96.6
Hma1.2p1_1306F.1_g274630 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 2.6e-07 58.2 29 96.6
GSVIVG01036755001 Vitis vinifera HOM05D000372 ORTHO05D004502 2.6e-07 58.2 31 87.1
Aa31LG6G12940 Aethionema arabicum HOM05D000372 ORTHO05D004502 3.4e-07 57.8 37 78.4
MD15G1243500 Malus domestica HOM05D000372 ORTHO05D004502 3.4e-07 57.8 43 72.1
RcHm_v2.0_Chr2g0099171 Rosa chinensis HOM05D000372 ORTHO05D004502 3.4e-07 57.8 29 96.6
TWI73G1271 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 3.4e-07 57.8 29 96.6
CSS0007471 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 4.4e-07 57.4 29 96.6
CSS0008893 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 4.4e-07 57.4 29 96.6
ECA238G2015 Erigeron canadensis HOM05D000372 ORTHO05D004502 4.4e-07 57.4 43 69.8
HanXRQChr14g0441821 Helianthus annuus HOM05D000372 ORTHO05D004502 5.8e-07 57.0 29 93.1
Lsat_1_v5_gn_2_75821 Lactuca sativa HOM05D000372 ORTHO05D004502 5.8e-07 57.0 29 93.1
ATR0712G052 Amborella trichopoda HOM05D000372 ORTHO05D004502 7.6e-07 56.6 43 72.1
Lalb_Chr05g0229781 Lupinus albus HOM05D000372 ORTHO05D004502 7.6e-07 56.6 42 73.8
Manes.01G147600 Manihot esculenta HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
Manes.02G106100 Manihot esculenta HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
Potri.005G111700 Populus trichocarpa HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
Prupe.7G170700 Prunus persica HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
PGR119G2511 Punica granatum HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
QL06p050985 Quercus lobata HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
Sabra07G0048400 Salix brachista HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
TWI53G0045 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
TAR110G0002 Trochodendron aralioides HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
vmacro22145 Vaccinium macrocarpon HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
GSVIVG01018749001 Vitis vinifera HOM05D000372 ORTHO05D004502 7.6e-07 56.6 29 93.1
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 9.9e-07 56.2 29 93.1
MBI09_g13309_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D004502 9.9e-07 56.2 29 93.1
TAR628G1126 Trochodendron aralioides HOM05D000372 ORTHO05D004502 9.9e-07 56.2 29 89.7
CAN.G1274.23 Capsicum annuum HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Cfa006992 Carpinus fangiana HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Haze_03739 Corylus avellana HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Nitab4.5_0001658g0020 Nicotiana tabacum HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Peaxi162Scf00328g00717 Petunia axillaris HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Sc07g0001070 Simmondsia chinensis HOM05D000372 ORTHO05D004502 1.3e-06 55.8 28 96.4
Solyc02g083670.4 Solanum lycopersicum HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
Sopen02g028450 Solanum pennellii HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
PGSC0003DMG400003578 Solanum tuberosum HOM05D000372 ORTHO05D004502 1.3e-06 55.8 29 89.7
AUR62003350 Chenopodium quinoa HOM05D000372 ORTHO05D004502 1.7e-06 55.5 29 89.7
THA.LOC104819744 Tarenaya hassleriana HOM05D000372 ORTHO05D004502 1.7e-06 55.5 43 72.1
Gohir.D03G008200 Gossypium hirsutum HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 86.2
Lj4A222T49 Lonicera japonica HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 89.7
MD02G1128300 Malus domestica HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 89.7
Nn5g30757 Nelumbo nucifera HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 89.7
Potri.007G056400 Populus trichocarpa HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 89.7
Sabra05G0091400 Salix brachista HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 89.7
TPR.G10518 Trifolium pratense HOM05D000372 ORTHO05D004502 2.2e-06 55.1 29 86.2
COL.COLO4_22452 Corchorus olitorius HOM05D000372 ORTHO05D004502 2.9e-06 54.7 29 86.2
DCAR_010144 Daucus carota HOM05D000372 ORTHO05D004502 2.9e-06 54.7 29 86.2
Duzib147G1045 Durio zibethinus HOM05D000372 ORTHO05D004502 2.9e-06 54.7 29 86.2
Duzib264G1133 Durio zibethinus HOM05D000372 ORTHO05D004502 2.9e-06 54.7 29 86.2
Medtr8g075340 Medicago truncatula HOM05D000372 ORTHO05D004502 2.9e-06 54.7 42 69.0
Thecc.01G015600 Theobroma cacao HOM05D000372 ORTHO05D004502 2.9e-06 54.7 29 86.2
AL3G50850 Arabidopsis lyrata HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
AT2G17820 Arabidopsis thaliana HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
BcaB03g16556 Brassica carinata HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
BcaC06g36332 Brassica carinata HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
A07p03130 Brassica napus HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
C07p05260 Brassica napus HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
BolC7t40925H Brassica oleracea HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
BraA07t28109Z Brassica rapa HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
Carub.0003s3196 Capsella rubella HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
CARHR108230 Cardamine hirsuta HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
Thhalv10022521m.g Eutrema salsugineum HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
Sp3g31280 Schrenkiella parvula HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
SpUn0082_0010 Schrenkiella parvula HOM05D000372 ORTHO05D004502 3.7e-06 54.3 29 89.7
Aa31LG8G15050 Aethionema arabicum HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 89.7
Ah.03g149030 Amaranthus hybridus HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 86.2
AUR62029486 Chenopodium quinoa HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 86.2
Ca_24916_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 82.8
Eucgr.I02335 Eucalyptus grandis HOM05D000372 ORTHO05D004502 4.9e-06 53.9 28 89.3
HanXRQChr16g0531551 Helianthus annuus HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 86.2
Lsat_1_v5_gn_3_72520 Lactuca sativa HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 86.2
Nn6g32011 Nelumbo nucifera HOM05D000372 ORTHO05D004502 4.9e-06 53.9 29 86.2
arahy.Tifrunner.gnm1.ann1.15FVU2 Arachis hypogaea HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
arahy.Tifrunner.gnm1.ann1.L959U0 Arachis hypogaea HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Ca_22392_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
MELO3C013758.2 Cucumis melo HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 86.2
Glyma.01G164800 Glycine max HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Glyma.02G046600 Glycine max HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Glyma.16G125100 Glycine max HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Gohir.A02G171900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 82.8
Gorai.003G008400 Gossypium raimondii HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 82.8
Lj4g0025702 Lotus japonicus HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Medtr5g022470 Medicago truncatula HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 82.8
Phvul.003G264600 Phaseolus vulgaris HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Pp3c5_3880 Physcomitrium patens HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 79.3
Psat4g101400 Pisum sativum HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
Sed0009374 Sechium edule HOM05D000372 ORTHO05D004502 6.4e-06 53.5 29 86.2
VMungo0251G1705 Vigna mungo HOM05D000372 ORTHO05D004502 6.4e-06 53.5 28 89.3
MSTRG.3608 Avicennia marina HOM05D000372 ORTHO05D004502 8.4e-06 53.1 43 65.1
CiPaw.08G129700 Carya illinoinensis HOM05D000372 ORTHO05D004502 8.4e-06 53.1 29 82.8
Migut.L00691 Erythranthe guttata HOM05D000372 ORTHO05D004502 8.4e-06 53.1 29 82.8
Gohir.D11G045900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 8.4e-06 53.1 29 82.8
Gorai.007G049200 Gossypium raimondii HOM05D000372 ORTHO05D004502 8.4e-06 53.1 29 82.8


User provided reference genes

Program Settings