Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022629 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D017727 1.3e-70 269.6 137 100.0
CSS0023287 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D017727 1.3e-70 269.6 137 100.0
Rhsim12G0114900 Rhododendron simsii HOM05D001482 ORTHO05D001499 4.1e-32 141.7 99 72.7
Prupe.8G038800 Prunus persica HOM05D001482 ORTHO05D001499 1.0e-22 110.5 95 58.9
Hma1.2p1_0224F.1_g094660 Hydrangea macrophylla HOM05D001482 ORTHO05D001499 1.5e-21 106.7 95 55.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 2.5e-21 105.9 85 69.4
Prupe.3G287400 Prunus persica HOM05D001482 ORTHO05D001499 1.2e-20 103.6 95 54.7
Lju41C37G7 Lonicera japonica HOM05D001482 ORTHO05D001499 2.7e-20 102.4 94 54.3
CSS0028746 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D001499 4.7e-20 101.7 95 54.7
CSS0045059 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D001499 4.7e-20 101.7 95 54.7
TAR374G1638 Trochodendron aralioides HOM05D001482 ORTHO05D001499 8.0e-20 100.9 93 58.1
Actinidia35755 Actinidia chinensis HOM05D001482 ORTHO05D001499 1.4e-19 100.1 95 52.6
Actinidia06011 Actinidia chinensis HOM05D001482 ORTHO05D001499 3.0e-19 99.0 99 54.5
Rhsim08G0053000 Rhododendron simsii HOM05D001482 ORTHO05D001499 8.8e-19 97.4 95 53.7
CSS0030691 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D001499 1.5e-18 96.7 94 53.2
TWI15G0287 Tripterygium wilfordii HOM05D001482 ORTHO05D001499 1.7e-17 93.2 95 51.6
TAR622G1371 Trochodendron aralioides HOM05D001482 ORTHO05D001499 1.7e-17 93.2 95 50.5
Dinv35085 Davidia involucrata HOM05D001482 ORTHO05D001499 2.8e-17 92.4 84 56.0
Thecc.04G012400 Theobroma cacao HOM05D001482 ORTHO05D001499 8.3e-17 90.9 97 51.5
Lsat_1_v5_gn_0_29301 Lactuca sativa HOM05D001482 ORTHO05D001499 1.1e-16 90.5 96 52.1
Lj2g0010471 Lotus japonicus HOM05D001482 ORTHO05D001499 1.1e-16 90.5 95 53.7
Lj3A1054T82 Lonicera japonica HOM05D001482 ORTHO05D001499 1.4e-16 90.1 95 52.6
FAN02G0888 Fragaria x ananassa HOM05D001482 ORTHO05D001499 1.8e-16 89.7 96 50.0
Actinidia36097 Actinidia chinensis HOM05D001482 ORTHO05D001499 2.4e-16 89.4 98 50.0
Haze_14697 Corylus avellana HOM05D001482 ORTHO05D001499 2.4e-16 89.4 95 49.5
Lj3g0026972 Lotus japonicus HOM05D001482 ORTHO05D001499 2.4e-16 89.4 94 53.2
Oeu043039.2 Olea europaea HOM05D001482 ORTHO05D001499 4.1e-16 88.6 96 47.9
QL02p075785 Quercus lobata HOM05D001482 ORTHO05D001499 4.1e-16 88.6 95 47.4
FAN05G1187 Fragaria x ananassa HOM05D001482 ORTHO05D001499 5.3e-16 88.2 97 51.5
ClCG10G014050 Citrullus lanatus HOM05D001482 ORTHO05D001499 7.0e-16 87.8 85 54.1
Nn3g16837 Nelumbo nucifera HOM05D001482 ORTHO05D001499 7.0e-16 87.8 96 50.0
CSS0019924 Camellia sinensis var. sinensis HOM05D001482 ORTHO05D001499 9.1e-16 87.4 85 52.9
MELO3C009972.2 Cucumis melo HOM05D001482 ORTHO05D001499 1.2e-15 87.0 85 54.1
Dinv33473 Davidia involucrata HOM05D001482 ORTHO05D001499 1.2e-15 87.0 92 48.9
MD17G1031900 Malus domestica HOM05D001482 ORTHO05D001499 1.2e-15 87.0 91 51.6
QL03p059565 Quercus lobata HOM05D001482 ORTHO05D001499 1.6e-15 86.7 96 51.0
FAN09G3063 Fragaria x ananassa HOM05D001482 ORTHO05D001499 2.0e-15 86.3 109 46.8
Gohir.A05G358100 Gossypium hirsutum HOM05D001482 ORTHO05D001499 2.0e-15 86.3 99 45.5
vmacro05843 Vaccinium macrocarpon HOM05D001482 ORTHO05D001499 2.0e-15 86.3 99 50.5
Duzib147G0648 Durio zibethinus HOM05D001482 ORTHO05D001499 2.7e-15 85.9 98 45.9
Gohir.A09G027200 Gossypium hirsutum HOM05D001482 ORTHO05D001499 2.7e-15 85.9 97 46.4
Gohir.D09G026850 Gossypium hirsutum HOM05D001482 ORTHO05D001499 2.7e-15 85.9 97 46.4
Gorai.006G031000 Gossypium raimondii HOM05D001482 ORTHO05D001499 2.7e-15 85.9 97 46.4
Sed0004886 Sechium edule HOM05D001482 ORTHO05D001499 2.7e-15 85.9 85 54.1
CiPaw.04G026200 Carya illinoinensis HOM05D001482 ORTHO05D001499 3.5e-15 85.5 95 48.4
CANSAT64G2550 Cannabis sativa HOM05D001482 ORTHO05D001499 5.9e-15 84.7 93 51.6
CiPaw.03G040400 Carya illinoinensis HOM05D001482 ORTHO05D001499 5.9e-15 84.7 95 46.3
CsaV3_3G042610 Cucumis sativus L. HOM05D001482 ORTHO05D001499 5.9e-15 84.7 85 52.9
Duzib264G0359 Durio zibethinus HOM05D001482 ORTHO05D001499 5.9e-15 84.7 101 44.6
Gohir.D04G056000 Gossypium hirsutum HOM05D001482 ORTHO05D001499 5.9e-15 84.7 100 45.0
Gorai.012G062900 Gossypium raimondii HOM05D001482 ORTHO05D001499 5.9e-15 84.7 99 44.4
MD09G1029900 Malus domestica HOM05D001482 ORTHO05D001499 5.9e-15 84.7 91 51.6
Rhsim10G0019500 Rhododendron simsii HOM05D001482 ORTHO05D001499 5.9e-15 84.7 95 48.4
Eucgr.J02221 Eucalyptus grandis HOM05D001482 ORTHO05D001499 1.3e-14 83.6 96 49.0
Manes.15G149300 Manihot esculenta HOM05D001482 ORTHO05D001499 1.3e-14 83.6 85 51.8
HanXRQChr17g0548301 Helianthus annuus HOM05D001482 ORTHO05D001499 1.7e-14 83.2 101 50.5
TWI36G1733 Tripterygium wilfordii HOM05D001482 ORTHO05D001499 1.7e-14 83.2 94 47.9
ECA232G3779 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.2e-14 82.8 95 51.6
VMungo0464G0844 Vigna mungo HOM05D001482 ORTHO05D001499 3.8e-14 82.0 93 47.3
COL.COLO4_29039 Corchorus olitorius HOM05D001482 ORTHO05D001499 5.0e-14 81.6 87 51.7
arahy.Tifrunner.gnm1.ann1.8040JK Arachis hypogaea HOM05D001482 ORTHO05D001499 8.5e-14 80.9 95 47.4
MSTRG.15520 Avicennia marina HOM05D001482 ORTHO05D001499 1.5e-13 80.1 100 44.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.9e-13 79.7 97 47.4
Phvul.004G011700 Phaseolus vulgaris HOM05D001482 ORTHO05D001499 1.9e-13 79.7 93 47.3
Ah.10g032250 Amaranthus hybridus HOM05D001482 ORTHO05D001499 2.5e-13 79.3 105 41.0
CAN.G53.35 Capsicum annuum HOM05D001482 ORTHO05D001499 3.2e-13 79.0 94 46.8
PGR083G0117 Punica granatum HOM05D001482 ORTHO05D001499 3.2e-13 79.0 84 51.2
FAN09G3858 Fragaria x ananassa HOM05D001482 ORTHO05D001499 4.2e-13 78.6 102 46.1
Sed0012292 Sechium edule HOM05D001482 ORTHO05D001499 5.5e-13 78.2 85 49.4
FAN02G2263 Fragaria x ananassa HOM05D001482 ORTHO05D001499 9.4e-13 77.4 96 47.9
RcHm_v2.0_Chr2g0172381 Rosa chinensis HOM05D001482 ORTHO05D001499 1.2e-12 77.0 96 46.9
Glyma.05G005600 Glycine max HOM05D001482 ORTHO05D001499 1.6e-12 76.6 93 45.2
Solyc02g062740.3 Solanum lycopersicum HOM05D001482 ORTHO05D001499 1.6e-12 76.6 93 48.4
Sopen02g013760 Solanum pennellii HOM05D001482 ORTHO05D001499 1.6e-12 76.6 93 48.4
FvH4_6g50980 Fragaria vesca HOM05D001482 ORTHO05D001499 2.1e-12 76.3 96 46.9
FAN14G2994 Fragaria x ananassa HOM05D001482 ORTHO05D001499 2.1e-12 76.3 96 46.9
Lsat_1_v5_gn_4_183040 Lactuca sativa HOM05D001482 ORTHO05D001499 2.1e-12 76.3 99 45.5
Peaxi162Scf00005g00086 Petunia axillaris HOM05D001482 ORTHO05D001499 2.7e-12 75.9 97 44.3
PSO210G5384 Papaver somniferum HOM05D001482 ORTHO05D001499 3.6e-12 75.5 93 48.4
FAN05G5520 Fragaria x ananassa HOM05D001482 ORTHO05D001499 4.7e-12 75.1 96 45.8
Migut.K01383 Erythranthe guttata HOM05D001482 ORTHO05D001499 8.0e-12 74.3 95 45.3
CAN.G192.1 Capsicum annuum HOM05D001482 ORTHO05D001499 1.8e-11 73.2 87 47.1
Cc09_g04720 Coffea canephora HOM05D001482 ORTHO05D001499 1.8e-11 73.2 101 44.6
DCAR_011239 Daucus carota HOM05D001482 ORTHO05D001499 1.8e-11 73.2 93 44.1
MBI10_g28005_MAGBIO Magnolia biondii HOM05D001482 ORTHO05D001499 1.8e-11 73.2 96 47.9
PSO210G2925 Papaver somniferum HOM05D001482 ORTHO05D001499 1.8e-11 73.2 93 47.3
PGSC0003DMG400001934 Solanum tuberosum HOM05D001482 ORTHO05D001499 1.8e-11 73.2 97 45.4
FAN05G4389 Fragaria x ananassa HOM05D001482 ORTHO05D001499 2.3e-11 72.8 95 44.2
Ca_04180_v3 Cicer arietinum L. HOM05D001482 ORTHO05D001499 3.0e-11 72.4 94 44.7
Nitab4.5_0001289g0140 Nicotiana tabacum HOM05D001482 ORTHO05D001499 3.0e-11 72.4 96 46.9
FAN14G2299 Fragaria x ananassa HOM05D001482 ORTHO05D001499 4.0e-11 72.0 99 45.5
AUR62038667 Chenopodium quinoa HOM05D001482 ORTHO05D001499 5.2e-11 71.6 94 40.4
Peaxi162Scf00089g00638 Petunia axillaris HOM05D001482 ORTHO05D001499 6.8e-11 71.2 97 43.3
Cc11_g15320 Coffea canephora HOM05D001482 ORTHO05D001499 8.8e-11 70.9 92 45.7
Medtr6g005580 Medicago truncatula HOM05D001482 ORTHO05D001499 8.8e-11 70.9 96 43.8
Medtr3g011150 Medicago truncatula HOM05D001482 ORTHO05D001499 1.5e-10 70.1 95 43.2
Medtr5g019420 Medicago truncatula HOM05D001482 ORTHO05D001499 1.5e-10 70.1 95 42.1
FAN09G3971 Fragaria x ananassa HOM05D001482 ORTHO05D001499 2.6e-10 69.3 95 43.2
Lalb_Chr06g0175881 Lupinus albus HOM05D001482 ORTHO05D001499 2.6e-10 69.3 89 42.7
Nitab4.5_0002790g0030 Nicotiana tabacum HOM05D001482 ORTHO05D001499 2.6e-10 69.3 97 43.3
Sabra16G0226700 Salix brachista HOM05D001482 ORTHO05D001499 2.6e-10 69.3 99 46.5
Atru.chr6.2336 Acer truncatum HOM05D001482 ORTHO05D001499 3.4e-10 68.9 106 42.5
EL10Ac6g13700 Beta vulgaris HOM05D001482 ORTHO05D001499 3.4e-10 68.9 88 47.7
AUR62018181 Chenopodium quinoa HOM05D001482 ORTHO05D001499 3.4e-10 68.9 94 39.4
FvH4_6g30300 Fragaria vesca HOM05D001482 ORTHO05D001499 3.4e-10 68.9 96 45.8
FAN02G3902 Fragaria x ananassa HOM05D001482 ORTHO05D001499 3.4e-10 68.9 95 43.2
Solyc04g005250.4 Solanum lycopersicum HOM05D001482 ORTHO05D001499 4.4e-10 68.6 97 43.3
Sopen04g001230 Solanum pennellii HOM05D001482 ORTHO05D001499 4.4e-10 68.6 97 43.3
Oeu062934.1 Olea europaea HOM05D001482 ORTHO05D001499 5.7e-10 68.2 124 37.1
Sopen10g028870 Solanum pennellii HOM05D001482 ORTHO05D001499 5.7e-10 68.2 97 43.3
SGA_v2.0_scaffold30G12437 Striga asiatica HOM05D001482 ORTHO05D001499 5.7e-10 68.2 88 44.3
HanXRQChr09g0266271 Helianthus annuus HOM05D001482 ORTHO05D001499 7.5e-10 67.8 118 36.4
Nitab4.5_0000149g0260 Nicotiana tabacum HOM05D001482 ORTHO05D001499 7.5e-10 67.8 93 45.2
Cpa.g.sc470.1 Carica papaya HOM05D001482 ORTHO05D017727 9.8e-10 67.4 81 44.4
CAN.G959.16 Capsicum annuum HOM05D001482 ORTHO05D001499 2.2e-09 66.2 97 41.2
Glyma.01G102000 Glycine max HOM05D001482 ORTHO05D017727 2.8e-09 65.9 85 43.5
RcHm_v2.0_Chr2g0136791 Rosa chinensis HOM05D001482 ORTHO05D001499 2.8e-09 65.9 95 42.1
arahy.Tifrunner.gnm1.ann1.B5NWYW Arachis hypogaea HOM05D001482 ORTHO05D001499 4.8e-09 65.1 81 46.9
Glyma.02G035700 Glycine max HOM05D001482 ORTHO05D001499 4.8e-09 65.1 89 42.7
Glyma.19G006100 Glycine max HOM05D001482 ORTHO05D001499 4.8e-09 65.1 82 45.1
RcHm_v2.0_Chr2g0136781 Rosa chinensis HOM05D001482 ORTHO05D001499 4.8e-09 65.1 79 44.3
Solyc10g078190.2 Solanum lycopersicum HOM05D001482 ORTHO05D001499 6.3e-09 64.7 97 42.3
PGSC0003DMG400007182 Solanum tuberosum HOM05D001482 ORTHO05D001499 6.3e-09 64.7 97 41.2
Ah.03g132820 Amaranthus hybridus HOM05D001482 ORTHO05D001499 8.3e-09 64.3 83 44.6
Nn6g33667 Nelumbo nucifera HOM05D001482 ORTHO05D001499 1.4e-08 63.5 96 43.8
Peaxi162Scf00326g00710 Petunia axillaris HOM05D001482 ORTHO05D001499 1.4e-08 63.5 99 39.4
TPR.G8713 Trifolium pratense HOM05D001482 ORTHO05D001499 1.4e-08 63.5 96 37.5
CDE07G0104 Ceratophyllum demersum HOM05D001482 ORTHO05D001499 1.8e-08 63.2 95 42.1
SalBow7G2022 Salvia bowleyana HOM05D001482 ORTHO05D001499 1.8e-08 63.2 95 37.9
ECA233G3680 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.4e-08 62.8 98 40.8
Sc03g0007690 Simmondsia chinensis HOM05D001482 ORTHO05D001499 3.1e-08 62.4 96 42.7
Manes.17G113600 Manihot esculenta HOM05D001482 ORTHO05D001499 5.4e-08 61.6 94 41.5
Aqoxy3G02901 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 7.0e-08 61.2 71 47.9
Hund26557 Selenicereus undatus HOM05D001482 ORTHO05D001499 7.0e-08 61.2 94 37.2
arahy.Tifrunner.gnm1.ann1.JED5FR Arachis hypogaea HOM05D001482 ORTHO05D001499 9.1e-08 60.8 78 43.6
PSO782G0476 Papaver somniferum HOM05D001482 ORTHO05D001499 9.1e-08 60.8 101 42.6
Sc07g0003200 Simmondsia chinensis HOM05D001482 ORTHO05D001499 9.1e-08 60.8 94 35.1
FvH4_6g30450 Fragaria vesca HOM05D001482 ORTHO05D001499 1.2e-07 60.5 108 35.2
AUR62014067 Chenopodium quinoa HOM05D001482 ORTHO05D001499 1.6e-07 60.1 86 41.9
Aqoxy4G01661 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 2.0e-07 59.7 51 58.8
Aqoxy1G02523 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 2.7e-07 59.3 50 60.0
AUR62005407 Chenopodium quinoa HOM05D001482 ORTHO05D001499 4.5e-07 58.5 84 40.5
FAN05G0645 Fragaria x ananassa HOM05D001482 ORTHO05D017727 1.0e-06 57.4 106 35.8
SHI25497 Sapria himalayana HOM05D001482 ORTHO05D017727 1.0e-06 57.4 59 50.8
VMungo1215G3159 Vigna mungo HOM05D001482 ORTHO05D001499 1.3e-06 57.0 85 36.5
Aqoxy3G02508 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 2.3e-06 56.2 50 58.0
MBI16_g27077_MAGBIO Magnolia biondii HOM05D001482 ORTHO05D001499 2.9e-06 55.8 87 34.5


User provided reference genes

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