Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.1e-50 203.0 101 100.0
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 6.7e-48 193.7 97 97.9
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 6.7e-48 193.7 97 97.9
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 6.7e-48 193.7 97 97.9
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.9e-47 192.2 97 97.9
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.1e-45 186.4 98 93.9
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 2.7e-41 171.8 98 85.7
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 1.5e-39 166.0 98 80.6
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 7.4e-39 163.7 98 79.6
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 7.4e-39 163.7 98 80.6
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 9.6e-39 163.3 98 80.6
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.8e-38 161.8 98 79.6
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 2.8e-38 161.8 98 79.6
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 6.3e-38 160.6 98 77.6
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 6.3e-38 160.6 98 77.6
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 8.2e-38 160.2 98 77.6
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 1.4e-37 159.5 98 78.6
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 1.8e-37 159.1 107 76.6
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 3.1e-37 158.3 100 75.0
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 5.3e-37 157.5 98 77.6
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 6.9e-37 157.1 99 78.8
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 6.9e-37 157.1 98 76.5
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 6.9e-37 157.1 98 76.5
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 1.2e-36 156.4 98 75.5
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 2.0e-36 155.6 98 75.5
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 2.6e-36 155.2 98 73.5
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 3.4e-36 154.8 98 76.5
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 3.4e-36 154.8 98 76.5
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 4.5e-36 154.5 98 76.5
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 4.5e-36 154.5 98 75.5
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.0e-35 153.3 98 74.5
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 1.3e-35 152.9 98 75.5
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.7e-35 152.5 98 73.5
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 2.2e-35 152.1 98 74.5
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 2.2e-35 152.1 98 73.5
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 2.2e-35 152.1 98 73.5
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 6.5e-35 150.6 100 75.0
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 6.5e-35 150.6 98 75.5
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 6.5e-35 150.6 98 74.5
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 8.4e-35 150.2 98 74.5
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 8.4e-35 150.2 98 73.5
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 8.4e-35 150.2 98 71.4
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 1.1e-34 149.8 98 72.4
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 1.1e-34 149.8 98 74.5
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.1e-34 149.8 97 75.3
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 73.5
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 71.4
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 72.4
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 72.4
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 72.4
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 1.4e-34 149.4 98 72.4
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 2.5e-34 148.7 98 74.5
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 71.4
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 73.5
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 71.4
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 72.4
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 72.4
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 72.4
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 72.4
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 3.2e-34 148.3 98 71.4
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 5.5e-34 147.5 98 74.5
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 5.5e-34 147.5 98 72.4
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 5.5e-34 147.5 97 69.1
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 5.5e-34 147.5 98 72.4
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 7.2e-34 147.1 98 67.3
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 9.3e-34 146.7 98 69.4
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.2e-33 146.4 98 70.4
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 3.5e-33 144.8 98 69.4
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 1.0e-32 143.3 98 68.4
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 1.8e-32 142.5 98 73.5
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 1.8e-32 142.5 98 70.4
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 2.3e-32 142.1 100 73.0
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 5.1e-32 141.0 98 69.4
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 6.7e-32 140.6 98 68.4
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 8.7e-32 140.2 98 69.4
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 8.7e-32 140.2 98 69.4
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 1.1e-31 139.8 96 71.9
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 3.3e-31 138.3 98 68.4
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 4.3e-31 137.9 98 64.3
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 4.3e-31 137.9 98 64.3
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 4.3e-31 137.9 98 64.3
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 5.7e-31 137.5 98 64.3
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 7.4e-31 137.1 98 68.4
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 7.4e-31 137.1 98 70.4
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 9.7e-31 136.7 98 64.3
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.6e-30 136.0 98 65.3
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 2.2e-30 135.6 98 64.3
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 2.2e-30 135.6 97 69.1
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 3.7e-30 134.8 98 68.4
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 3.7e-30 134.8 98 66.3
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 4.8e-30 134.4 98 69.4
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 4.8e-30 134.4 99 65.7
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 6.3e-30 134.0 98 63.3
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 8.2e-30 133.7 98 66.3
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 1.1e-29 133.3 98 64.3
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.1e-29 133.3 99 64.6
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 1.8e-29 132.5 98 62.2
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 2.4e-29 132.1 98 65.3
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 3.1e-29 131.7 98 65.3
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 3.1e-29 131.7 81 77.8
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 4.1e-29 131.3 98 62.2
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 4.1e-29 131.3 98 65.3
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 5.3e-29 131.0 90 68.9
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 6.9e-29 130.6 98 62.2
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 6.9e-29 130.6 88 69.3
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 6.9e-29 130.6 98 63.3
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 1.2e-28 129.8 99 62.6
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 1.2e-28 129.8 98 61.2
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 1.2e-28 129.8 98 61.2
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 1.2e-28 129.8 98 61.2
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 1.2e-28 129.8 98 64.3
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 1.5e-28 129.4 98 59.2
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 1.5e-28 129.4 98 64.3
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 2.6e-28 128.6 98 61.2
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 2.6e-28 128.6 98 61.2
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 2.6e-28 128.6 98 61.2
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 5.9e-28 127.5 98 65.3
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 7.7e-28 127.1 98 60.2
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.3e-27 126.3 88 65.9
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 1.7e-27 125.9 101 62.4
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 1.1e-26 123.2 99 62.6
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.1e-26 123.2 98 64.3
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 1.1e-26 123.2 98 59.2
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 1.9e-26 122.5 98 60.2
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 5.5e-26 120.9 86 67.4
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 7.2e-26 120.6 75 74.7
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.2e-25 119.8 105 57.1
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 1.2e-25 119.8 94 63.8
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 1.6e-25 119.4 97 56.7
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 4.6e-25 117.9 98 61.2
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 7.9e-25 117.1 97 52.6
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 6.7e-24 114.0 98 55.1
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 6.7e-24 114.0 98 55.1
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 8.8e-24 113.6 100 58.0
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 2.5e-23 112.1 98 56.1
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 4.8e-22 107.8 97 56.7
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.1e-21 106.7 75 68.0
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 1.4e-21 106.3 98 52.0
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 4.1e-21 104.8 87 59.8
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 5.3e-21 104.4 75 64.0
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 1.2e-20 103.2 64 75.0
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 2.6e-20 102.1 98 51.0
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 7.7e-20 100.5 71 70.4
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.3e-19 99.8 88 55.7
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 6.5e-19 97.4 67 64.2
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 3.2e-18 95.1 62 71.0
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 3.2e-18 95.1 122 44.3
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 2.1e-17 92.4 99 52.5
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 7.9e-17 90.5 88 53.4
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 2.3e-16 89.0 98 43.9
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 1.5e-15 86.3 98 50.0
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.5e-15 86.3 90 51.1
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 4.4e-15 84.7 94 45.7
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 4.8e-14 81.3 98 51.0
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 2.6e-12 75.5 75 52.0
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 5.0e-11 71.2 76 43.4
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 8.0e-09 63.9 95 35.8
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 2.3e-08 62.4 101 37.6
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 2.3e-08 62.4 91 33.0
TPR.G34410 Trifolium pratense HOM05D002316 ORTHO05D002280 2.3e-08 62.4 53 60.4
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 4.0e-08 61.6 90 35.6
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 4.0e-08 61.6 90 37.8
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 4.0e-08 61.6 96 39.6
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 4.4e-07 58.2 79 32.9
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 4.4e-07 58.2 111 32.4
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 1.3e-06 56.6 98 31.6
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.7e-06 56.2 98 28.6
TPR.G11240 Trifolium pratense HOM05D002316 ORTHO05D002280 1.7e-06 56.2 85 32.9
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 2.2e-06 55.8 98 28.6
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 2.2e-06 55.8 95 30.5
Gohir.D13G153100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 3.7e-06 55.1 96 32.3
Gorai.013G173000 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.7e-06 55.1 96 32.3
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 3.7e-06 55.1 95 33.7
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 4.8e-06 54.7 76 39.5
AUR62038474 Chenopodium quinoa HOM05D002316 ORTHO05D002280 4.8e-06 54.7 87 34.5
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 4.8e-06 54.7 85 31.8
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 4.8e-06 54.7 90 30.0
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 6.3e-06 54.3 76 39.5
Ca_26990_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 6.3e-06 54.3 88 30.7
Lj3g0021485 Lotus japonicus HOM05D002316 ORTHO05D002280 6.3e-06 54.3 76 34.2
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 8.2e-06 53.9 77 36.4


User provided reference genes

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