Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-27 125.6 60 100.0
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 5.0e-19 97.1 56 82.1
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 6.6e-19 96.7 56 80.4
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 78.6
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 78.6
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 78.6
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 78.6
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 8.6e-19 96.3 56 80.4
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 80.4
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 78.6
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 80.4
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 80.4
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 80.4
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 1.1e-18 95.9 56 78.6
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.5e-18 95.5 56 78.6
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.5e-18 95.5 56 78.6
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.5e-18 95.5 56 80.4
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.5e-18 95.5 56 80.4
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.9e-18 95.1 56 80.4
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 1.9e-18 95.1 56 76.8
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 1.9e-18 95.1 56 80.4
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.9e-18 95.1 56 78.6
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 1.9e-18 95.1 56 78.6
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 2.5e-18 94.7 56 78.6
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 3.3e-18 94.4 56 78.6
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 76.8
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 76.8
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 76.8
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 4.3e-18 94.0 56 78.6
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 76.8
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 76.8
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 76.8
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 76.8
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 76.8
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 5.6e-18 93.6 56 78.6
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 7.3e-18 93.2 56 75.0
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 7.3e-18 93.2 56 78.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 9.5e-18 92.8 56 76.8
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 9.5e-18 92.8 56 75.0
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 76.8
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 76.8
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 75.0
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 76.8
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 76.8
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 1.2e-17 92.4 56 76.8
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 1.6e-17 92.0 56 76.8
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 1.6e-17 92.0 56 76.8
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.6e-17 92.0 56 76.8
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.6e-17 92.0 56 76.8
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 1.6e-17 92.0 56 76.8
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 2.8e-17 91.3 56 76.8
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.8e-17 91.3 56 76.8
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 2.8e-17 91.3 56 73.2
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 76.8
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 75.0
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 3.6e-17 90.9 56 73.2
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 4.7e-17 90.5 56 75.0
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 6.2e-17 90.1 56 75.0
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 8.1e-17 89.7 56 73.2
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 8.1e-17 89.7 56 75.0
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 3.1e-16 87.8 56 73.2
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 3.1e-16 87.8 54 75.9
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 6.8e-16 86.7 56 73.2
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 6.8e-16 86.7 56 73.2
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 6.8e-16 86.7 56 73.2
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-15 85.9 50 82.0
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.5e-15 85.5 56 71.4
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.5e-15 85.5 56 69.6
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 4.4e-15 84.0 54 70.4
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 1.7e-14 82.0 56 69.6
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 1.7e-14 82.0 56 67.9
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 3.2e-13 77.8 56 66.1
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 2.7e-12 74.7 56 67.9
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 2.7e-12 74.7 56 67.9
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 3.5e-12 74.3 56 67.9
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 4.6e-12 73.9 56 66.1
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 4.6e-12 73.9 56 66.1
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 4.6e-12 73.9 56 66.1
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 4.6e-12 73.9 56 66.1
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 2.3e-11 71.6 44 70.5
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.0e-11 71.2 49 71.4
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 8.6e-11 69.7 56 58.9
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-10 69.3 47 66.0
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 1.9e-10 68.6 39 84.6
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.7e-09 63.9 42 69.0
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 1.2e-07 59.3 28 96.4
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.3e-06 55.8 47 57.4


User provided reference genes

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