Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.1e-123 445.7 222 100.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.6e-118 427.9 213 100.0
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 4.8e-107 391.3 213 91.5
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.4e-106 389.0 214 91.1
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 5.5e-103 377.9 213 86.9
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 7.2e-103 377.5 213 87.8
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 1.9e-100 369.4 198 93.4
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 2.6e-97 359.0 215 85.1
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 4.6e-94 348.2 223 79.8
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.7e-91 339.7 215 80.5
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 9.1e-90 334.0 213 76.5
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 1.5e-89 333.2 213 77.5
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.6e-89 332.4 216 78.7
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 3.4e-89 332.0 230 73.0
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.7e-89 330.9 216 78.2
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.3e-88 330.1 216 78.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.7e-88 329.7 261 65.9
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.8e-88 328.6 260 65.8
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 5.0e-88 328.2 213 78.4
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 5.0e-88 328.2 234 73.1
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 5.0e-88 328.2 255 66.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.9e-87 326.2 267 65.5
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.9e-87 326.2 213 75.6
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 9.4e-87 323.9 213 76.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.2e-86 323.6 261 65.5
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.2e-86 323.6 216 76.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.6e-86 323.2 213 75.1
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.6e-86 323.2 213 75.1
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.6e-86 323.2 214 75.7
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 6.1e-86 321.2 214 75.7
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 7.9e-86 320.9 214 74.3
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 1.4e-85 320.1 224 71.9
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.4e-85 320.1 214 75.7
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.3e-85 319.3 213 75.1
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 5.1e-85 318.2 213 72.3
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.1e-84 317.0 214 75.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.5e-84 316.6 241 69.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.0e-84 316.2 214 72.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 5.7e-84 314.7 213 72.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 9.7e-84 313.9 214 74.3
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.3e-83 313.5 213 74.2
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 2.8e-83 312.4 215 74.4
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 3.7e-83 312.0 215 73.5
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-82 310.5 262 64.9
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.4e-82 309.3 215 71.2
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.1e-82 308.5 268 62.3
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.1e-82 308.5 214 72.0
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 5.3e-82 308.1 213 73.7
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.1e-82 307.4 214 71.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.2e-81 307.0 214 73.8
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.6e-81 306.6 213 72.8
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 3.5e-81 305.4 218 71.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.5e-81 305.1 214 71.0
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 2.9e-80 302.4 178 83.1
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.8e-80 302.0 213 72.3
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 3.8e-80 302.0 213 70.9
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 8.5e-80 300.8 213 71.8
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.5e-79 300.1 213 70.4
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 4.2e-79 298.5 215 69.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.6e-78 296.6 222 70.3
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 2.7e-78 295.8 227 67.4
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.0e-77 293.9 253 60.5
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.0e-77 293.9 215 70.7
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.4e-77 293.5 221 68.3
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.8e-77 293.1 225 67.1
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.0e-77 292.4 278 57.6
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 4.0e-77 292.0 230 66.1
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.1e-76 290.4 254 59.8
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.1e-76 290.4 303 54.5
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.5e-76 290.0 251 62.2
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.3e-76 288.9 213 70.4
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 5.7e-76 288.1 252 59.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 9.7e-76 287.3 218 69.7
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.7e-75 286.6 213 69.5
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.2e-75 286.2 213 70.4
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.8e-75 285.0 213 70.0
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 8.2e-75 284.3 213 70.0
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.2e-75 284.3 213 70.0
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-74 283.9 213 69.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 2.4e-74 282.7 253 58.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 4.1e-74 282.0 250 61.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 5.3e-74 281.6 220 63.2
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 7.0e-74 281.2 235 63.4
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.0e-74 281.2 213 69.5
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 9.1e-74 280.8 215 65.6
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.2e-73 280.4 260 59.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.7e-73 279.3 263 57.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 2.7e-73 279.3 266 57.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.5e-73 278.9 261 57.1
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 7.7e-73 277.7 261 56.3
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.3e-72 276.9 200 68.5
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.3e-72 276.9 257 58.0
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.7e-72 276.6 236 61.9
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 2.2e-72 276.2 231 62.8
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 5.0e-72 275.0 255 57.6
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 6.5e-72 274.6 258 57.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 6.5e-72 274.6 253 58.5
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.5e-71 273.5 257 56.4
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.5e-71 272.7 213 65.7
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.2e-71 272.3 258 57.0
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 9.4e-71 270.8 214 65.0
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.6e-70 270.0 250 58.4
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.6e-70 270.0 250 58.4
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 6.3e-67 258.1 213 65.7
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 6.3e-67 258.1 219 60.7
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.4e-66 256.1 218 59.6
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 4.5e-65 251.9 193 67.9
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.6e-62 242.3 223 58.7
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 4.9e-59 231.9 197 61.4
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 8.3e-59 231.1 169 64.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 7.7e-57 224.6 217 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.3e-56 223.8 233 49.8
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.0e-56 221.9 151 70.9
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.3e-55 219.2 147 72.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.3e-55 219.2 147 72.1
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 2.1e-54 216.5 172 57.6
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.9e-51 206.1 213 57.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.1e-47 194.1 129 69.8
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.8e-45 184.9 156 60.9
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.4e-42 177.2 136 63.2
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 4.1e-34 149.1 215 40.5
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.5e-33 146.0 79 87.3
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.4e-11 72.0 72 52.8
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.3e-08 63.5 81 35.8
CiPaw.13G018400 Carya illinoinensis HOM05D005841 ORTHO05D007132 3.6e-06 56.2 41 73.2


User provided reference genes

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