Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.4e-39 165.6 74 100.0
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.2e-25 119.4 72 79.2
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.8e-19 97.4 72 66.7
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 8.1e-19 96.7 72 63.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 8.1e-19 96.7 72 63.9
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 5.3e-18 94.0 61 73.8
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.3e-18 94.0 61 73.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.3e-18 94.0 73 64.4
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 6.9e-18 93.6 61 68.9
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 6.9e-18 93.6 72 62.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 6.9e-18 93.6 69 68.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 9.0e-18 93.2 72 62.5
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.0e-18 93.2 61 70.5
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.5e-17 92.4 61 68.9
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.5e-17 92.4 61 67.2
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.0e-17 92.0 61 70.5
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 2.0e-17 92.0 61 65.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.6e-17 91.7 61 67.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 3.4e-17 91.3 61 65.6
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.4e-17 91.3 61 70.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.4e-17 91.3 72 63.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.4e-17 91.3 61 70.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.5e-17 90.9 61 67.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 4.5e-17 90.9 61 70.5
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 5.8e-17 90.5 61 65.6
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.6e-17 90.1 61 63.9
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 7.6e-17 90.1 61 65.6
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 9.9e-17 89.7 61 65.6
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.3e-16 89.4 61 65.6
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-16 89.4 57 66.7
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.3e-16 89.4 59 71.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-16 89.0 61 62.3
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 2.2e-16 88.6 61 65.6
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 2.2e-16 88.6 61 65.6
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.9e-16 88.2 59 69.5
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.9e-16 88.2 61 65.6
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-16 88.2 61 62.3
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 2.9e-16 88.2 61 65.6
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.8e-16 87.8 61 63.9
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.8e-16 87.8 61 65.6
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.8e-16 87.8 61 65.6
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.8e-16 87.8 61 67.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.9e-16 87.4 61 63.9
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 6.4e-16 87.0 61 65.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.4e-16 86.7 61 67.2
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 8.4e-16 86.7 61 62.3
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 8.4e-16 86.7 69 59.4
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.4e-16 86.7 61 63.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 8.4e-16 86.7 61 62.3
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-15 85.9 61 62.3
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.4e-15 85.9 61 62.3
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.9e-15 85.5 61 62.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.4e-15 85.1 61 63.9
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.4e-15 85.1 62 66.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.2e-15 84.7 61 65.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 3.2e-15 84.7 68 58.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 3.2e-15 84.7 74 58.1
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 5.4e-15 84.0 61 62.3
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 7.1e-15 83.6 71 56.3
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 7.1e-15 83.6 61 62.3
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 9.3e-15 83.2 69 58.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.6e-14 82.4 69 58.0
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.6e-14 82.4 61 60.7
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.6e-14 82.4 59 59.3
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.6e-14 82.4 59 59.3
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.6e-14 82.4 61 65.6
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.7e-14 81.6 61 59.0
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.7e-14 81.6 61 60.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.5e-14 81.3 59 59.3
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 4.6e-14 80.9 61 60.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 4.6e-14 80.9 61 60.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 4.6e-14 80.9 64 57.8
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.0e-14 80.5 69 56.5
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 6.0e-14 80.5 49 73.5
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.9e-14 80.1 49 73.5
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.0e-13 79.7 58 62.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.3e-13 79.3 61 60.7
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.3e-13 79.3 61 60.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.3e-13 79.3 58 63.8
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-13 79.3 61 60.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.8e-13 79.0 61 57.4
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.8e-13 79.0 63 60.3
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.8e-13 79.0 61 60.7
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.8e-13 79.0 59 64.4
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.8e-13 79.0 56 66.1
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 2.3e-13 78.6 61 59.0
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.3e-13 78.6 61 60.7
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.0e-13 78.2 61 60.7
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 3.0e-13 78.2 59 62.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.9e-13 77.8 61 59.0
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.1e-13 77.4 49 69.4
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 5.1e-13 77.4 63 58.7
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 6.7e-13 77.0 61 59.0
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 8.7e-13 76.6 68 52.9
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 8.7e-13 76.6 63 58.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.1e-12 76.3 63 55.6
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-12 76.3 61 59.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.1e-12 76.3 62 58.1
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.1e-12 76.3 63 58.7
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.1e-12 76.3 63 58.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.1e-12 76.3 68 54.4
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.5e-12 75.9 59 61.0
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.9e-12 75.5 80 51.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.3e-12 74.7 60 58.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 4.3e-12 74.3 71 53.5
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.3e-12 74.3 84 47.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.3e-12 74.3 61 55.7
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 4.3e-12 74.3 59 57.6
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.6e-12 73.9 49 69.4
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 5.6e-12 73.9 49 69.4
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 7.4e-12 73.6 61 57.4
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.3e-11 72.8 49 69.4
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.6e-11 72.4 63 57.1
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.6e-11 72.4 47 68.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-11 72.0 46 69.6
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-11 72.0 46 69.6
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-11 72.0 46 69.6
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.1e-11 72.0 52 61.5
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.8e-11 71.6 49 67.3
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.8e-11 71.6 60 56.7
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.7e-11 71.2 52 59.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.7e-11 71.2 49 67.3
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.8e-11 70.9 47 66.0
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.2e-11 70.5 47 66.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.2e-11 70.5 47 66.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 8.1e-11 70.1 49 65.3
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 8.1e-11 70.1 49 65.3
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 8.1e-11 70.1 49 65.3
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 8.1e-11 70.1 49 65.3
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.1e-11 70.1 61 55.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 8.1e-11 70.1 72 47.2
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.1e-11 70.1 46 67.4
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-10 69.7 49 65.3
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.1e-10 69.7 47 68.1
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.1e-10 69.7 49 65.3
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.4e-10 69.3 49 63.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 4.0e-10 67.8 56 55.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.0e-10 66.6 52 55.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.0e-10 66.6 61 50.8
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.2e-09 66.2 44 61.4
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-09 65.9 61 49.2
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.0e-09 65.5 45 64.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 3.4e-09 64.7 62 51.6
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.5e-09 64.3 51 56.9
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 5.8e-09 63.9 47 55.3
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 3.8e-08 61.2 57 52.6
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 3.8e-08 61.2 57 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 4.2e-07 57.8 45 57.8
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.6e-06 55.8 45 53.3
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.5e-06 54.7 53 50.9


User provided reference genes

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