Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.0e-31 139.4 69 100.0
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.0e-31 137.9 69 98.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.0e-31 137.9 69 98.6
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 4.3e-22 107.5 69 72.5
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.8e-20 102.1 65 73.8
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.2e-20 100.5 66 69.7
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.2e-19 99.4 64 73.4
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.2e-19 99.4 64 73.4
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.2e-19 99.4 66 69.7
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-19 99.0 66 72.7
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.0e-19 98.6 65 72.3
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 2.0e-19 98.6 66 66.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 2.0e-19 98.6 66 69.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.6e-19 98.2 65 72.3
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.4e-19 97.4 66 74.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.8e-19 97.1 64 71.9
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 5.8e-19 97.1 66 72.7
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.8e-19 97.1 64 71.9
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 5.8e-19 97.1 66 69.7
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.8e-19 97.1 66 72.7
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 5.8e-19 97.1 66 71.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 7.6e-19 96.7 69 73.9
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 9.9e-19 96.3 64 70.3
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.3e-18 95.9 66 68.2
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.3e-18 95.9 68 69.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.7e-18 95.5 69 68.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.7e-18 95.5 64 70.3
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 2.2e-18 95.1 66 71.2
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.9e-18 94.7 64 68.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 2.9e-18 94.7 66 69.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 4.9e-18 94.0 66 65.2
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 4.9e-18 94.0 65 67.7
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 4.9e-18 94.0 64 68.8
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.1e-17 92.8 69 66.7
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.1e-17 92.8 69 66.7
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-17 92.8 60 70.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-17 92.8 60 70.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.4e-17 91.7 62 74.2
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.2e-17 90.9 69 66.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.2e-17 90.9 67 64.2
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 5.4e-17 90.5 65 63.1
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.4e-17 90.5 66 71.2
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 9.3e-17 89.7 67 59.7
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 9.3e-17 89.7 57 75.4
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 9.3e-17 89.7 57 75.4
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 9.3e-17 89.7 62 69.4
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 66 68.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 64 65.6
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 64 65.6
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.6e-16 89.0 61 70.5
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 72.6
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 1.6e-16 89.0 68 66.2
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.1e-16 88.6 64 64.1
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.1e-16 88.6 65 64.6
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.7e-16 88.2 65 64.6
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.7e-16 88.2 65 64.6
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.7e-16 88.2 66 62.1
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.5e-16 87.8 66 66.7
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.5e-16 87.8 62 72.6
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 4.6e-16 87.4 68 64.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.0e-16 87.0 67 64.2
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 6.0e-16 87.0 68 63.2
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-15 86.3 58 72.4
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-15 85.9 65 58.5
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-15 85.9 65 61.5
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-15 85.9 65 61.5
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.7e-15 85.5 59 67.8
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.3e-15 85.1 58 70.7
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.0e-15 84.7 66 65.2
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.0e-15 84.7 66 63.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 5.1e-15 84.0 58 70.7
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 6.6e-15 83.6 66 59.1
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.6e-15 83.6 59 64.4
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 6.6e-15 83.6 66 65.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 62 67.7
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.5e-14 82.4 54 74.1
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.9e-14 82.0 68 57.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 68 57.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.9e-14 82.0 68 57.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 62 64.5
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 62 64.5
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.9e-14 82.0 66 57.6
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 58 70.7
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.9e-14 82.0 58 67.2
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.9e-14 82.0 58 67.2
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 57.6
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 57.6
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 4.3e-14 80.9 61 65.6
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 4.3e-14 80.9 61 67.2
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 4.3e-14 80.9 62 64.5
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 4.3e-14 80.9 68 63.2
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 5.6e-14 80.5 66 56.1
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 65.5
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 5.6e-14 80.5 57 63.2
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.3e-14 80.1 66 62.1
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.3e-14 80.1 66 62.1
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 7.3e-14 80.1 62 64.5
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 7.3e-14 80.1 62 62.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 9.6e-14 79.7 68 54.4
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 9.6e-14 79.7 59 66.1
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 9.6e-14 79.7 58 69.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 9.6e-14 79.7 66 56.1
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.3e-13 79.3 66 59.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-13 79.3 66 62.1
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.3e-13 79.3 63 61.9
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.6e-13 79.0 68 55.9
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.6e-13 79.0 68 54.4
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.6e-13 79.0 66 56.1
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.6e-13 79.0 57 66.7
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.6e-13 79.0 51 72.5
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.6e-13 79.0 58 65.5
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.1e-13 78.6 62 62.9
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.1e-13 78.6 62 62.9
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.1e-13 78.6 66 60.6
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.1e-13 78.6 57 64.9
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 3.6e-13 77.8 66 57.6
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.8e-13 77.4 62 64.5
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 6.2e-13 77.0 65 53.8
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 6.2e-13 77.0 64 57.8
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.1e-12 76.3 64 60.9
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.8e-12 75.5 62 64.5
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 4.0e-12 74.3 51 66.7
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 4.0e-12 74.3 62 58.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 5.3e-12 73.9 62 58.1
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.9e-12 73.6 62 62.9
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.2e-11 72.8 62 61.3
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.2e-11 72.8 68 51.5
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.2e-11 72.8 68 51.5
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 1.2e-11 72.8 68 52.9
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.0e-11 72.0 57 56.1
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.0e-11 72.0 57 56.1
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 3.4e-11 71.2 68 50.0
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 3.4e-11 71.2 68 50.0
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 3.4e-11 71.2 68 50.0
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 4.5e-11 70.9 58 58.6
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 4.5e-11 70.9 58 58.6
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 4.5e-11 70.9 62 61.3
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 5.8e-11 70.5 62 59.7
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 5.8e-11 70.5 66 54.5
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 5.8e-11 70.5 50 64.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 9.9e-11 69.7 62 58.1
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.7e-10 68.9 62 51.6
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 53.2
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 6.4e-10 67.0 60 51.7
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 6.4e-10 67.0 62 50.0
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 8.4e-10 66.6 39 84.6
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 8.4e-10 66.6 57 57.9
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 7.1e-09 63.5 59 59.3
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 9.3e-09 63.2 62 48.4
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.3e-09 63.2 56 60.7
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-08 62.4 53 60.4
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.7e-08 61.6 53 58.5
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.5e-08 61.2 53 58.5
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 3.5e-08 61.2 61 54.1
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.0e-08 60.5 66 50.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 6.0e-08 60.5 57 56.1
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 7.9e-08 60.1 57 56.1
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.3e-07 59.3 57 54.4
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 57 54.4
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 57 56.1
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 57 57.9
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 2.3e-07 58.5 57 54.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.0e-07 58.2 53 58.5
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.5e-06 55.8 62 50.0
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.9e-06 55.5 55 49.1


User provided reference genes

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