Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.5e-144 514.6 264 100.0
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.8e-59 231.9 273 56.8
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.8e-59 231.9 273 56.8
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.3e-55 220.7 273 54.6
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.7e-55 220.3 273 53.8
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.1e-54 217.6 273 52.7
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.1e-54 217.6 264 54.5
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.3e-54 216.1 273 53.1
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.6e-54 215.3 272 52.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 5.6e-54 215.3 273 52.4
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 5.6e-54 215.3 273 54.2
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.2e-53 214.2 273 52.0
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.6e-53 213.8 273 53.1
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 2.1e-53 213.4 264 53.0
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.6e-53 212.6 273 52.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 4.7e-53 212.2 273 52.0
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 8.1e-53 211.5 264 52.7
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 8.1e-53 211.5 273 51.3
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.4e-52 210.7 273 51.3
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.4e-52 210.7 273 51.3
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.4e-52 210.7 273 52.0
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.8e-52 210.3 264 52.3
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.8e-52 210.3 273 51.3
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.8e-52 210.3 264 52.7
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.3e-52 209.9 273 51.3
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 2.3e-52 209.9 273 52.7
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.3e-52 209.9 273 52.0
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.3e-52 209.9 264 52.7
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.1e-52 209.5 264 52.3
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 3.1e-52 209.5 273 52.7
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.1e-52 209.5 273 51.6
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 4.0e-52 209.1 273 51.3
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 4.0e-52 209.1 273 51.6
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 5.2e-52 208.8 264 51.9
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.2e-51 207.6 264 52.7
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.2e-51 207.6 273 50.2
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.2e-51 207.6 272 51.5
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.5e-51 207.2 273 51.3
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.5e-51 207.2 273 51.3
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.5e-51 207.2 273 50.9
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.5e-51 207.2 273 50.9
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.0e-51 206.8 273 50.9
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.0e-51 206.8 273 50.9
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-51 206.8 264 51.5
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 2.0e-51 206.8 273 50.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.6e-51 206.5 270 51.5
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.4e-51 206.1 273 50.9
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 3.4e-51 206.1 273 50.9
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 4.4e-51 205.7 273 50.2
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 4.4e-51 205.7 273 51.6
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 5.8e-51 205.3 263 50.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.8e-51 205.3 273 51.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.8e-51 205.3 264 51.1
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 7.6e-51 204.9 273 50.5
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 7.6e-51 204.9 273 50.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 9.9e-51 204.5 273 49.8
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 9.9e-51 204.5 273 50.5
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.3e-50 204.1 264 50.0
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-50 204.1 273 50.5
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.3e-50 204.1 273 50.2
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.7e-50 203.8 273 50.5
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.7e-50 203.8 273 49.8
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.2e-50 203.4 264 51.5
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.9e-50 203.0 273 50.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.7e-50 202.6 264 51.1
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 4.9e-50 202.2 273 50.5
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 4.9e-50 202.2 273 50.5
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 6.4e-50 201.8 273 48.7
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 8.4e-50 201.4 273 49.8
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 8.4e-50 201.4 273 49.1
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 8.4e-50 201.4 264 50.4
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.1e-49 201.1 273 49.1
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.9e-49 200.3 273 50.2
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.4e-49 198.7 273 48.7
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 7.1e-49 198.4 264 50.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 7.1e-49 198.4 269 49.4
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 9.2e-49 198.0 273 49.5
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 9.2e-49 198.0 273 49.5
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.6e-48 197.2 273 49.8
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-48 197.2 273 48.4
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.6e-48 197.2 272 48.2
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 2.1e-48 196.8 273 48.0
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.1e-48 196.8 273 48.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 2.1e-48 196.8 273 48.4
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.5e-48 196.1 248 50.8
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 4.6e-48 195.7 273 47.6
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 4.6e-48 195.7 273 47.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 4.6e-48 195.7 273 48.0
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 4.6e-48 195.7 273 48.0
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 4.6e-48 195.7 273 48.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 6.0e-48 195.3 273 47.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 6.0e-48 195.3 273 47.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 6.0e-48 195.3 273 47.6
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.3e-47 193.4 273 47.6
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.3e-47 193.4 268 51.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 46.9
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 46.9
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 46.9
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 46.9
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 46.9
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 3.0e-47 193.0 273 48.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 6.6e-47 191.8 273 48.4
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 8.6e-47 191.4 273 48.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.9e-46 190.3 273 46.9
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.3e-46 188.3 273 48.0
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 9.6e-46 188.0 264 47.0
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.2e-45 187.6 265 49.1
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-45 187.6 273 48.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.2e-45 187.6 248 49.2
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.2e-45 187.6 273 47.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.6e-45 187.2 248 53.2
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.6e-45 186.0 273 47.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.4e-44 184.1 277 45.8
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.2e-44 182.2 268 48.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.6e-43 179.9 268 47.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.6e-43 179.9 278 45.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.8e-42 176.0 153 66.7
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 4.9e-42 175.6 269 46.1
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 4.9e-42 175.6 269 46.1
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 8.4e-42 174.9 335 42.4
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.1e-41 174.5 160 64.4
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.7e-40 169.9 248 46.4
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 3.5e-40 169.5 268 45.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.6e-40 169.1 248 46.0
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 4.6e-40 169.1 243 48.1
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 7.8e-40 168.3 153 66.0
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.3e-39 167.5 248 43.5
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.7e-39 167.2 274 43.1
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-38 164.1 264 44.3
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.3e-38 162.5 153 62.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 5.6e-38 162.2 248 44.4
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.6e-37 160.6 248 44.4
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 1.6e-37 160.6 267 45.3
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.8e-37 159.8 247 46.2
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 8.1e-37 158.3 268 44.8
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 4.9e-34 149.1 268 42.9
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 6.4e-34 148.7 264 43.2
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.4e-33 146.7 264 42.8
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 7.9e-32 141.7 245 41.6
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 6.6e-31 138.7 150 58.7
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.1e-30 137.9 268 41.8
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.5e-30 137.5 259 41.3
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 7.4e-30 135.2 260 38.1
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.4e-28 131.0 123 57.7
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-28 130.6 269 37.5
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 2.3e-23 113.6 248 35.9
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 6.7e-23 112.1 183 43.7
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.3e-22 109.4 106 58.5
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.6e-21 107.5 185 43.8
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 3.7e-21 106.3 134 46.3
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 4.8e-21 105.9 88 64.8
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 6.2e-21 105.5 248 35.1
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 8.1e-21 105.1 265 36.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.8e-20 104.0 164 46.3
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.8e-20 104.0 164 46.3
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.8e-20 104.0 164 46.3
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.8e-20 104.0 164 46.3
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.8e-20 104.0 164 46.3
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.5e-19 100.9 202 38.6
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 4.5e-19 99.4 146 43.8
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.5e-18 95.5 75 66.7
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 5.5e-17 92.4 99 52.5
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 5.5e-17 92.4 99 52.5
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 4.6e-16 89.4 61 68.9
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 4.6e-16 89.4 44 93.2
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.7e-14 82.4 64 75.0
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.5e-11 72.8 55 70.9
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-10 71.2 55 67.3
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 6.1e-08 62.4 34 76.5


User provided reference genes

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