Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.7e-38 162.2 81 100.0
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.7e-28 127.5 81 80.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 5.2e-27 124.0 81 77.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 5.2e-27 124.0 81 77.8
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.0e-26 122.1 81 77.8
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.9e-25 117.5 81 74.1
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.9e-23 110.5 85 67.1
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.0e-22 109.8 85 67.1
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.3e-22 108.6 81 69.1
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-20 102.8 77 70.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-20 102.8 77 70.1
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.6e-20 102.4 85 64.7
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 2.1e-20 102.1 82 67.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 6.2e-20 100.5 82 68.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 8.0e-20 100.1 76 65.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-19 99.4 81 67.9
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.4e-19 99.4 76 71.1
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.8e-19 99.0 81 66.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-19 98.2 84 65.5
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.1e-19 98.2 84 65.5
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.0e-19 97.8 83 65.1
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 8.9e-19 96.7 81 66.7
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.2e-18 96.3 75 65.3
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.2e-18 96.3 87 60.9
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-18 96.3 81 66.7
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-18 96.3 81 66.7
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.5e-18 95.9 81 64.2
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.6e-18 95.1 81 61.7
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.6e-18 95.1 81 64.2
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.4e-18 94.7 81 65.4
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 5.8e-18 94.0 85 62.4
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.8e-18 94.0 83 62.7
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.8e-18 94.0 82 64.6
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 7.5e-18 93.6 81 60.5
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 7.5e-18 93.6 81 66.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.3e-17 92.8 81 65.4
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.2e-17 92.0 81 65.4
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 2.9e-17 91.7 81 61.7
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.7e-17 91.3 82 63.4
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.7e-17 91.3 82 62.2
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 8.3e-17 90.1 78 64.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.9e-16 89.0 87 58.6
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.4e-16 88.6 79 60.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.2e-16 88.2 81 58.0
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 3.2e-16 88.2 80 63.8
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-16 87.8 76 64.5
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-16 87.8 76 64.5
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 5.4e-16 87.4 78 60.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.0e-16 87.0 78 64.1
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 9.2e-16 86.7 82 61.0
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 9.2e-16 86.7 81 61.7
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.2e-16 86.7 81 61.7
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 9.2e-16 86.7 86 55.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.2e-15 86.3 76 63.2
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.2e-15 86.3 79 60.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-15 86.3 83 59.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.6e-15 85.9 85 56.5
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-15 85.5 80 62.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.0e-15 85.5 81 58.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.5e-15 84.7 80 57.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.6e-15 84.3 81 59.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 4.6e-15 84.3 81 59.3
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 7.8e-15 83.6 81 58.0
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.8e-15 83.6 76 63.2
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 7.8e-15 83.6 82 62.2
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.0e-14 83.2 80 55.0
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.0e-14 83.2 81 60.5
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 91 54.9
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.0e-14 83.2 91 54.9
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.0e-14 83.2 76 57.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.0e-14 83.2 81 58.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.3e-14 82.0 84 57.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.0e-14 81.6 81 54.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.0e-14 81.6 81 58.0
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.9e-14 81.3 82 56.1
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 5.0e-14 80.9 76 59.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 5.0e-14 80.9 89 53.9
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.0e-14 80.9 78 56.4
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 6.6e-14 80.5 81 58.0
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.6e-14 80.5 91 53.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.6e-14 80.1 86 54.7
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 57.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-13 79.0 80 58.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.9e-13 79.0 77 57.1
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.9e-13 79.0 84 56.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.5e-13 78.6 85 55.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.5e-13 78.6 75 58.7
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.5e-13 78.6 72 58.3
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.3e-13 78.2 79 55.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.3e-13 77.8 83 53.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-13 77.8 78 53.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.3e-13 77.8 78 57.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.6e-13 77.4 81 55.6
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.3e-13 77.0 77 57.1
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.5e-13 76.6 87 49.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 9.5e-13 76.6 80 57.5
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 81 56.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 81 55.6
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 82 56.1
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 75 56.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 75 57.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.6e-12 75.9 75 60.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.6e-12 75.9 78 53.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.6e-12 75.9 81 54.3
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.6e-12 74.7 75 56.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 3.6e-12 74.7 82 53.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.6e-12 74.7 92 51.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.6e-12 74.7 78 53.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.2e-12 73.9 87 54.0
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 6.2e-12 73.9 77 58.4
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.1e-12 73.6 77 57.1
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.1e-12 73.6 75 57.3
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 8.1e-12 73.6 82 52.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-11 73.2 75 54.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 52.4
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 52.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-11 72.4 82 54.9
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.8e-11 72.4 82 53.7
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.8e-11 72.4 77 55.8
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 1.8e-11 72.4 83 51.8
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.3e-11 72.0 83 53.0
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.1e-11 71.6 80 52.5
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 3.1e-11 71.6 75 54.7
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.1e-11 71.6 77 55.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-11 71.6 93 49.5
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 4.0e-11 71.2 58 62.1
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.0e-11 71.2 82 53.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 8.9e-11 70.1 75 53.3
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 8.9e-11 70.1 86 50.0
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 8.9e-11 70.1 76 51.3
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.2e-10 69.7 81 55.6
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.2e-10 69.7 82 51.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-10 69.7 84 52.4
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.5e-10 69.3 81 50.6
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.0e-10 68.9 84 53.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.0e-10 68.9 90 50.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.6e-10 68.6 72 54.2
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 9.9e-10 66.6 82 46.3
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 9.9e-10 66.6 72 52.8
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 9.9e-10 66.6 78 56.4
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-09 65.1 91 47.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-09 64.7 77 50.6
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.7e-09 64.7 101 44.6
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 4.9e-09 64.3 70 51.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.9e-09 64.3 76 52.6
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 6.4e-09 63.9 70 52.9
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 6.4e-09 63.9 70 52.9
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.4e-09 63.9 71 53.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.3e-09 63.5 84 47.6
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 74 51.4
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-08 62.8 74 51.4
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.4e-08 62.8 77 46.8
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-08 62.0 73 56.2
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-08 62.0 79 45.6
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.4e-08 62.0 77 48.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.2e-08 61.6 82 46.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.1e-08 60.5 77 50.6
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 7.1e-08 60.5 79 46.8
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 7.1e-08 60.5 78 47.4
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.2e-07 59.7 77 46.8
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 1.6e-07 59.3 85 42.4
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.6e-07 59.3 77 49.4
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.1e-07 58.9 77 44.2
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.3e-06 55.5 78 46.2
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.3e-06 55.5 58 51.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.3e-06 55.5 95 42.1


User provided reference genes

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