Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 2.0e-160 568.9 270 100.0
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 6.2e-125 451.1 268 81.0
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.7e-119 433.0 264 76.9
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.0e-111 407.1 279 70.6
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.9e-110 402.9 262 72.9
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.4e-105 386.7 265 70.6
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 1.0e-103 380.6 268 69.0
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 2.3e-103 379.4 270 68.5
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.9e-102 376.3 266 69.9
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.4e-97 360.1 273 63.7
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.4e-97 360.1 261 65.1
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 3.2e-97 359.0 258 67.4
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.5e-97 358.2 271 65.3
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 5.5e-97 358.2 273 63.0
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 1.2e-96 357.1 267 63.3
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 2.1e-96 356.3 265 63.8
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 4.6e-96 355.1 273 62.3
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 7.9e-96 354.4 257 65.4
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.0e-95 354.0 261 67.0
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 3.9e-95 352.1 261 63.6
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 5.1e-95 351.7 253 67.6
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.1e-94 350.5 265 63.8
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.9e-94 349.7 283 62.5
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.5e-94 349.4 233 71.2
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 3.7e-93 345.5 276 62.7
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 4.8e-93 345.1 274 64.2
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 8.2e-93 344.4 287 59.9
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 8.2e-93 344.4 258 65.5
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.1e-92 342.0 272 63.6
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.3e-92 341.7 272 63.2
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 9.0e-92 340.9 272 62.9
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.0e-91 339.7 272 62.9
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 5.8e-91 338.2 261 62.1
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 7.6e-91 337.8 272 59.6
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.0e-90 337.4 271 59.8
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.3e-90 337.0 272 62.5
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.7e-90 336.7 272 59.6
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.7e-90 336.7 267 61.8
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 6.5e-90 334.7 265 62.6
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 1.6e-88 330.1 273 59.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 2.7e-88 329.3 269 61.0
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.7e-88 329.3 286 57.3
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 3.5e-88 328.9 258 62.0
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.5e-88 328.9 233 67.8
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 6.1e-88 328.2 265 60.8
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 7.9e-88 327.8 266 58.3
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.0e-87 327.4 266 59.8
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 2.3e-87 326.2 266 61.3
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 3.9e-87 325.5 268 59.0
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 1.5e-86 323.6 269 58.7
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 2.5e-86 322.8 268 60.1
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 4.3e-86 322.0 273 57.5
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 9.7e-86 320.9 275 58.5
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 9.7e-86 320.9 239 65.7
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.3e-85 320.5 275 58.9
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.6e-85 320.1 268 59.3
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 3.7e-85 318.9 263 58.6
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 3.7e-85 318.9 259 58.3
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 8.2e-85 317.8 271 56.8
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-84 316.2 239 65.7
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 5.3e-84 315.1 272 58.1
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 6.9e-84 314.7 239 64.9
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 6.9e-84 314.7 240 65.0
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 9.0e-84 314.3 277 57.0
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 1.2e-83 313.9 269 58.0
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 1.2e-83 313.9 275 56.0
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 7.7e-83 311.2 236 63.1
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 3.8e-82 308.9 254 56.3
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 6.5e-82 308.1 271 56.8
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 6.5e-82 308.1 265 57.0
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 8.5e-82 307.8 260 57.7
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 2.5e-81 306.2 271 56.1
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 7.2e-81 304.7 250 62.0
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.6e-80 303.5 265 54.0
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 1.6e-80 303.5 237 63.7
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.1e-80 303.1 271 54.2
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 2.1e-80 303.1 266 56.0
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.7e-80 302.8 269 59.5
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.0e-79 300.8 277 54.2
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 3.0e-79 299.3 264 55.7
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 3.0e-79 299.3 258 54.7
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 3.0e-79 299.3 266 55.3
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 5.1e-79 298.5 272 55.9
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 1.1e-78 297.4 266 55.3
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.1e-78 297.4 234 63.7
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-78 296.6 266 54.9
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 9.7e-78 294.3 220 62.7
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 4.8e-77 292.0 279 53.4
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 6.3e-77 291.6 266 54.5
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.5e-75 287.0 259 53.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 1.7e-74 283.5 264 53.8
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 6.1e-72 275.0 240 57.5
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 6.3e-69 265.0 244 56.1
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 7.7e-67 258.1 254 53.9
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 3.6e-64 249.2 215 55.8
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 7.4e-62 241.5 235 51.5
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.3e-61 240.7 214 50.9
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 3.7e-61 239.2 175 65.1
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 5.3e-60 235.3 151 70.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 8.0e-56 221.5 256 44.9
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 1.7e-50 203.8 211 49.8
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 6.5e-50 201.8 175 58.9
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.4e-47 194.1 215 47.0
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 7.5e-46 188.3 239 46.4
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.0e-44 181.8 240 45.0
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.6e-43 180.6 251 43.8
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.7e-42 177.2 205 50.2
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 3.6e-40 169.5 247 40.9
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 7.5e-38 161.8 136 59.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.7e-37 160.6 195 43.1
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 2.9e-37 159.8 221 38.5
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 7.8e-35 151.8 106 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 3.9e-34 149.4 229 36.2
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 2.5e-33 146.7 85 72.9
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 9.5e-33 144.8 126 61.9
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 6.8e-31 138.7 235 35.7
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.1e-28 131.3 152 44.7
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 1.9e-28 130.6 238 33.6
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 2.4e-28 130.2 115 59.1
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 5.0e-26 122.5 103 61.2
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.9e-25 120.6 93 68.8
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.5e-25 120.2 105 60.0
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 5.8e-22 109.0 119 49.6
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 6.2e-16 89.0 83 53.0
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 4.4e-14 82.8 53 71.7
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 7.1e-12 75.5 300 23.7
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 6.6e-10 68.9 128 31.2
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 1.2e-08 64.7 221 26.2
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 1.2e-08 64.7 259 26.6
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.4e-07 61.2 266 24.8
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 2.4e-07 60.5 278 21.2
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 4.0e-07 59.7 254 25.2
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 5.2e-07 59.3 262 24.0
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 1.2e-06 58.2 92 35.9
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 1.5e-06 57.8 286 22.7


User provided reference genes

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