Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023156 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 6.5e-38 160.2 80 100.0
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 4.4e-10 67.8 75 48.0
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 1.3e-09 66.2 75 46.7
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 1.3e-09 66.2 75 46.7
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 1.3e-09 66.2 74 47.3
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 1.3e-09 66.2 74 47.3
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.3e-09 66.2 75 45.3
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 1.7e-09 65.9 65 49.2
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 2.2e-09 65.5 49 61.2
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 2.2e-09 65.5 75 45.3
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 4.8e-09 64.3 74 45.9
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 6.3e-09 63.9 75 46.7
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 8.2e-09 63.5 75 46.7
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.1e-08 63.2 75 46.7
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 1.4e-08 62.8 75 45.3
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.4e-08 62.8 75 44.0
TPR.G25694 Trifolium pratense HOM05D002989 ORTHO05D003218 2.4e-08 62.0 59 50.8
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 3.1e-08 61.6 75 45.3
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 3.1e-08 61.6 75 45.3
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 3.1e-08 61.6 75 42.7
Psat6g059080 Pisum sativum HOM05D002989 ORTHO05D003218 3.1e-08 61.6 59 50.8
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 4.1e-08 61.2 59 49.2
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 4.1e-08 61.2 75 42.7
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 4.1e-08 61.2 59 50.8
Zm00001eb114680 Zea mays HOM05D002989 ORTHO05D003218 4.1e-08 61.2 59 50.8
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 5.3e-08 60.8 75 42.7
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 5.3e-08 60.8 75 42.7
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 5.3e-08 60.8 59 54.2
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 7.0e-08 60.5 75 42.7
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 7.0e-08 60.5 59 52.5
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 7.0e-08 60.5 59 49.2
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 7.0e-08 60.5 75 42.7
Zm00001eb114650 Zea mays HOM05D002989 ORTHO05D003218 7.0e-08 60.5 55 50.9
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 9.1e-08 60.1 75 45.3
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 9.1e-08 60.1 52 59.6
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.2e-07 59.7 59 52.5
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 1.2e-07 59.7 52 57.7
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.2e-07 59.7 74 43.2
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.2e-07 59.7 75 42.7
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.2e-07 59.7 59 52.5
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 1.6e-07 59.3 59 50.8
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.6e-07 59.3 59 50.8
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 1.6e-07 59.3 59 50.8
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 2.7e-07 58.5 59 49.2
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 2.7e-07 58.5 59 50.8
Haze_04647 Corylus avellana HOM05D002989 ORTHO05D003218 2.7e-07 58.5 52 55.8
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 2.7e-07 58.5 58 46.6
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.7e-07 58.5 59 49.2
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 2.7e-07 58.5 69 46.4
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 4.5e-07 57.8 59 50.8
CSS0037859 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 4.5e-07 57.8 52 55.8
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 4.5e-07 57.8 74 41.9
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 4.5e-07 57.8 75 42.7
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 4.5e-07 57.8 75 41.3
VMungo0720G0909 Vigna mungo HOM05D000002 ORTHO05D000001 5.9e-07 57.4 75 40.0
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 7.7e-07 57.0 59 47.5
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 7.7e-07 57.0 52 55.8
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 7.7e-07 57.0 75 42.7
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 1.0e-06 56.6 73 43.8
Mapoly0019s0132 Marchantia polymorpha HOM05D002989 ORTHO05D003218 1.0e-06 56.6 58 50.0
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 1.0e-06 56.6 59 47.5
Zm00001eb114510 Zea mays HOM05D002989 ORTHO05D003218 1.0e-06 56.6 52 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2433 Anthoceros agrestis HOM05D002989 ORTHO05D003218 1.3e-06 56.2 58 50.0
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 1.3e-06 56.2 59 47.5
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 1.3e-06 56.2 75 41.3
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 1.3e-06 56.2 59 47.5
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 1.3e-06 56.2 58 46.6
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.3e-06 56.2 59 47.5
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 1.7e-06 55.8 59 45.8
unitig_0.g139 Utricularia gibba HOM05D002989 ORTHO05D003218 1.7e-06 55.8 59 44.1
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.7e-06 55.8 59 49.2
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 45.8
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 45.8
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 45.8
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 2.2e-06 55.5 75 38.7
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.2e-06 55.5 59 47.5
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 3.8e-06 54.7 59 45.8
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 3.8e-06 54.7 59 45.8
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 5.0e-06 54.3 59 45.8
Pp3c16_17820 Physcomitrium patens HOM05D002989 ORTHO05D003218 5.0e-06 54.3 75 38.7
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 5.0e-06 54.3 59 47.5
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 8.5e-06 53.5 59 45.8
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 8.5e-06 53.5 59 44.1


User provided reference genes

Program Settings