Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 5.1e-41 170.6 86 100.0
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 2.2e-39 165.2 86 97.7
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 5.4e-14 80.9 97 49.5
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 2.0e-13 79.0 87 52.9
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 2.0e-13 79.0 89 52.8
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 2.7e-13 78.6 96 50.0
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.8e-12 74.7 87 51.7
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 3.8e-12 74.7 87 51.7
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 5.0e-12 74.3 87 51.7
Actinidia18679 Actinidia chinensis HOM05D008837 ORTHO05D006961 8.6e-12 73.6 98 49.0
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 8.6e-12 73.6 91 50.5
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 1.1e-11 73.2 89 48.3
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 1.5e-11 72.8 93 47.3
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 2.5e-11 72.0 83 50.6
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 2.5e-11 72.0 100 46.0
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.5e-11 72.0 104 47.1
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 3.3e-11 71.6 88 45.5
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 4.2e-11 71.2 90 48.9
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.2e-10 69.7 90 50.0
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.2e-10 69.7 90 50.0
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 2.1e-10 68.9 97 47.4
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 2.1e-10 68.9 87 48.3
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 2.8e-10 68.6 90 46.7
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 2.8e-10 68.6 90 48.9
Dinv06444 Davidia involucrata HOM05D002018 ORTHO05D002179 4.7e-10 67.8 92 51.1
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 6.1e-10 67.4 86 51.2
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 6.1e-10 67.4 83 48.2
PGSC0003DMG400043889 Solanum tuberosum HOM05D008837 ORTHO05D006961 6.1e-10 67.4 104 46.2
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 6.1e-10 67.4 91 49.5
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 8.0e-10 67.0 83 44.6
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 8.0e-10 67.0 95 46.3
COL.COLO4_10830 Corchorus olitorius HOM05D008613 ORTHO05D006961 1.0e-09 66.6 88 45.5
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.0e-09 66.6 89 47.2
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.0e-09 66.6 89 47.2
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.0e-09 66.6 89 47.2
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 1.0e-09 66.6 94 46.8
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 1.0e-09 66.6 97 41.2
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 1.0e-09 66.6 90 47.8
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 1.4e-09 66.2 85 45.9
DCAR_020369 Daucus carota HOM05D008837 ORTHO05D011237 1.8e-09 65.9 86 45.3
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-09 65.9 89 47.2
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 2.3e-09 65.5 97 47.4
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.3e-09 65.5 83 49.4
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.3e-09 65.5 87 47.1
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 4.0e-09 64.7 90 45.6
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 4.0e-09 64.7 88 46.6
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 4.0e-09 64.7 99 44.4
vmacro11487 Vaccinium macrocarpon HOM05D008613 ORTHO05D006961 4.0e-09 64.7 97 40.2
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 6.8e-09 63.9 94 43.6
Cpa.g.sc3.157 Carica papaya HOM05D008837 ORTHO05D011237 8.9e-09 63.5 88 38.6
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 8.9e-09 63.5 89 46.1
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 8.9e-09 63.5 86 41.9
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 1.2e-08 63.2 94 48.9
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 1.5e-08 62.8 91 45.1
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 1.5e-08 62.8 86 46.5
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 2.6e-08 62.0 91 45.1
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 2.6e-08 62.0 90 41.1
Solyc03g082350.2 Solanum lycopersicum HOM05D008837 ORTHO05D006961 2.6e-08 62.0 102 42.2
Migut.E00723 Erythranthe guttata HOM05D008613 ORTHO05D006961 3.4e-08 61.6 83 42.2
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 3.4e-08 61.6 88 44.3
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 9.8e-08 60.1 91 44.0
Cc00_g29530 Coffea canephora HOM05D008837 ORTHO05D011237 1.3e-07 59.7 117 40.2
EL10Ac3g05184 Beta vulgaris HOM05D008613 ORTHO05D006961 1.7e-07 59.3 97 45.4
CiPaw.11G110000 Carya illinoinensis HOM05D008613 ORTHO05D006961 1.7e-07 59.3 86 43.0
DCAR_008981 Daucus carota HOM05D008837 ORTHO05D011237 2.2e-07 58.9 93 43.0
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 2.2e-07 58.9 80 40.0
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 2.8e-07 58.5 93 40.9
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 2.8e-07 58.5 93 40.9
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 3.7e-07 58.2 94 40.4
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 3.7e-07 58.2 87 46.0
Haze_09201 Corylus avellana HOM05D019613 ORTHO05D006961 3.7e-07 58.2 83 43.4
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.7e-07 58.2 98 40.8
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 3.7e-07 58.2 87 41.4
Sopen03g022070 Solanum pennellii HOM05D008837 ORTHO05D006961 4.9e-07 57.8 103 44.7
vmacro06438 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 4.9e-07 57.8 100 45.0
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 6.3e-07 57.4 101 39.6
Nitab4.5_0014067g0010 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.1e-06 56.6 94 42.6
Thhalv10015156m.g Eutrema salsugineum HOM05D011561 ORTHO05D011237 1.4e-06 56.2 85 40.0
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.4e-06 56.2 95 40.0
Carub.0001s3124 Capsella rubella HOM05D008703 ORTHO05D006961 1.8e-06 55.8 80 40.0
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 2.4e-06 55.5 83 41.0
Gorai.006G203600 Gossypium raimondii HOM05D018669 ORTHO05D011237 2.4e-06 55.5 95 40.0
AL1G47210 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 4.1e-06 54.7 80 41.2
Carub.0008s1447 Capsella rubella HOM05D011561 ORTHO05D011237 4.1e-06 54.7 81 39.5
Rhsim02G0253700 Rhododendron simsii HOM05D008613 ORTHO05D006961 4.1e-06 54.7 83 41.0
AT5G54165 Arabidopsis thaliana HOM05D011561 ORTHO05D011237 7.0e-06 53.9 85 43.5
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 7.0e-06 53.9 84 42.9
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 7.0e-06 53.9 84 42.9
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 9.2e-06 53.5 93 38.7
Sopen03g022090 Solanum pennellii HOM05D008837 ORTHO05D006961 9.2e-06 53.5 88 39.8


User provided reference genes

Program Settings