Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.2e-122 441.8 229 100.0
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.1e-106 387.5 225 92.4
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-101 373.6 240 84.2
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.4e-79 297.7 240 73.3
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.0e-72 277.3 238 68.5
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.4e-69 266.2 264 62.5
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.9e-66 256.5 238 64.3
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.4e-63 245.7 279 58.1
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 5.9e-60 235.0 256 60.2
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.7e-57 225.3 244 58.6
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.0e-57 224.6 226 62.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.8e-56 223.4 238 59.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.7e-54 216.9 228 60.1
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.1e-53 214.2 238 59.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.9e-50 203.4 234 57.3
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.2e-50 202.2 238 55.0
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.8e-49 199.5 236 52.5
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.2e-48 195.3 246 53.7
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 6.8e-48 194.9 221 58.4
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-47 194.1 239 54.4
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 3.4e-47 192.6 244 55.3
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.7e-47 191.8 238 54.2
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.7e-46 190.3 149 71.8
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.8e-46 189.5 241 52.7
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.7e-46 189.1 219 56.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.7e-46 189.1 237 52.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 4.9e-46 188.7 253 53.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.8e-45 186.8 237 51.5
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.8e-45 186.8 236 53.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.1e-45 185.7 231 56.3
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 7.0e-45 184.9 197 58.9
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 9.2e-45 184.5 238 52.1
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.0e-44 183.3 198 58.1
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.5e-44 182.2 241 51.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 5.9e-44 181.8 250 51.2
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.8e-44 181.4 227 51.5
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.0e-43 181.0 238 51.7
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-43 180.6 239 50.6
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.3e-43 180.6 241 51.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.3e-43 179.9 231 51.1
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 5.0e-43 178.7 226 52.2
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.5e-42 177.2 242 50.4
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.5e-42 177.2 188 56.4
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.9e-42 176.8 227 51.5
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.3e-42 176.0 237 52.7
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 4.3e-42 175.6 241 53.9
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.3e-42 175.6 231 54.1
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.4e-40 170.6 257 47.9
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.4e-40 170.6 230 50.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.4e-40 170.6 187 55.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 3.1e-40 169.5 244 50.0
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 5.2e-40 168.7 235 47.7
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 6.8e-40 168.3 242 49.6
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 8.9e-40 167.9 279 44.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 8.9e-40 167.9 185 57.3
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 8.9e-40 167.9 239 51.5
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.3e-38 164.1 235 51.5
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.3e-38 164.1 243 52.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.9e-38 162.9 239 48.5
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 8.3e-38 161.4 232 50.4
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.1e-37 161.0 243 50.2
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.4e-37 159.8 241 47.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.4e-37 159.8 241 48.1
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.2e-37 159.5 228 50.9
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 3.2e-37 159.5 241 50.6
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 7.0e-37 158.3 246 49.6
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.2e-36 157.5 220 50.0
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.0e-36 156.8 228 46.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 5.0e-35 152.1 243 49.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 5.0e-35 152.1 236 45.8
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 4.3e-34 149.1 195 48.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.2e-33 147.5 244 48.8
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.1e-33 146.7 233 48.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.7e-33 145.6 240 47.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.1e-32 144.4 255 43.5
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.4e-32 144.1 225 49.3
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 5.2e-32 142.1 242 46.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 6.8e-32 141.7 144 57.6
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 6.8e-32 141.7 144 57.6
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 6.8e-32 141.7 144 57.6
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 8.9e-32 141.4 244 43.9
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.4e-31 139.0 227 44.1
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 4.4e-31 139.0 229 45.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.4e-31 139.0 235 48.1
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.8e-31 138.7 74 97.3
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 7.5e-31 138.3 237 41.8
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.5e-31 138.3 232 47.0
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.5e-31 138.3 232 47.0
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-31 137.9 232 47.0
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.3e-30 137.5 237 44.3
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.3e-30 137.5 241 46.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.7e-30 137.1 235 43.0
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.7e-30 137.1 229 44.1
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.2e-30 136.7 144 55.6
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.9e-30 136.3 237 43.0
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 3.7e-30 136.0 221 45.2
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-30 136.0 233 46.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-30 136.0 233 46.8
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.7e-30 136.0 244 44.7
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 4.9e-30 135.6 181 50.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 4.9e-30 135.6 181 50.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.9e-30 135.6 232 46.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.9e-30 135.6 143 59.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 8.3e-30 134.8 241 40.2
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.4e-29 134.0 233 46.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.9e-29 133.7 245 46.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.9e-29 133.7 245 46.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.2e-29 132.9 236 45.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 4.1e-29 132.5 237 43.5
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.1e-28 130.2 242 44.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-28 130.2 236 44.9
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 2.7e-28 129.8 236 43.6
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.5e-28 129.4 242 44.2
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 6.0e-28 128.6 228 43.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-27 127.9 179 49.7
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.7e-27 127.1 227 42.7
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.3e-27 126.7 227 42.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.9e-27 125.9 235 42.6
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.1e-27 125.6 236 44.1
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.6e-27 125.2 104 62.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 6.6e-27 125.2 236 44.1
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.6e-27 125.2 236 44.1
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.6e-27 125.2 237 41.4
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-26 124.0 243 42.4
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.9e-26 123.6 223 45.3
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.5e-26 123.2 238 41.2
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.5e-26 123.2 227 43.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.6e-26 122.1 233 42.5
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.3e-26 121.7 236 43.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.2e-25 120.9 235 41.7
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.8e-25 119.8 189 45.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.4e-24 117.5 197 41.6
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.4e-24 117.5 230 43.5
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-24 116.7 241 41.1
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.0e-24 115.9 209 38.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 5.2e-24 115.5 192 49.0
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.2e-23 114.4 133 51.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.0e-23 113.6 232 42.7
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.0e-23 113.6 168 48.8
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.6e-23 113.2 143 52.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.1e-21 107.8 189 42.3
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.4e-21 107.5 184 43.5
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 2.4e-21 106.7 176 44.3
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-21 106.7 187 41.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 3.2e-21 106.3 171 46.2
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.4e-21 105.5 230 40.4
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.7e-20 103.2 146 46.6
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.5e-20 102.8 181 43.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.9e-19 99.4 225 38.2
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 5.1e-19 99.0 204 40.7
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 8.6e-19 98.2 220 36.8
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.6e-19 98.2 233 36.5
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.1e-18 97.8 206 39.8
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-18 96.7 205 39.0
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.3e-18 96.3 142 45.8
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 4.3e-18 95.9 173 41.0
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.8e-17 93.2 215 39.1
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 6.2e-17 92.0 203 37.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.1e-17 91.7 142 44.4
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.4e-16 90.9 219 37.4
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-16 90.5 142 43.7
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.4e-16 90.1 236 39.4
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 4.0e-16 89.4 154 35.1
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.5e-15 87.4 228 37.3
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 3.8e-14 82.8 179 34.6
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.4e-14 81.6 65 70.8
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.5e-12 76.3 218 33.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.0e-11 74.7 218 33.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.9e-11 72.8 92 48.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 5.1e-11 72.4 225 33.3
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 6.6e-11 72.0 113 39.8
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.1e-10 71.2 289 28.7
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-10 70.1 167 31.7
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 5.6e-10 68.9 155 34.8
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 3.1e-08 63.2 104 46.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-07 60.8 85 41.2
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.7e-06 57.4 65 52.3
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 2.2e-06 57.0 166 29.5
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 2.9e-06 56.6 186 29.6
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 2.9e-06 56.6 157 28.7


User provided reference genes

Program Settings