Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.6e-109 398.3 206 100.0
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.6e-109 398.3 206 100.0
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.1e-87 324.7 202 83.7
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.1e-84 315.5 210 78.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 9.0e-84 313.9 207 81.2
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.2e-82 309.3 208 78.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.5e-82 307.8 204 79.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 6.5e-82 307.8 206 78.2
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 6.5e-82 307.8 210 77.6
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.5e-81 305.8 193 80.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.2e-81 305.4 211 73.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.2e-81 305.4 211 76.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.5e-81 304.7 208 78.4
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 5.5e-81 304.7 202 79.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.3e-81 303.9 208 78.4
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.2e-80 303.5 212 75.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.0e-80 301.2 212 76.4
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.0e-80 301.2 209 75.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.9e-80 300.8 195 79.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.8e-79 299.7 200 76.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.3e-79 299.3 212 75.5
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.0e-79 298.9 195 79.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.0e-79 298.9 209 74.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.0e-79 298.9 207 75.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.0e-79 298.9 210 72.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.9e-79 298.5 190 80.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.9e-79 298.5 197 78.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 6.7e-79 297.7 206 75.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 8.7e-79 297.4 209 74.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 8.7e-79 297.4 204 74.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 8.7e-79 297.4 296 59.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-78 297.0 195 78.5
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.5e-78 296.6 202 76.7
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.9e-78 296.2 204 76.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.9e-78 296.2 211 74.9
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.5e-78 295.8 206 77.2
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 2.5e-78 295.8 207 74.9
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.5e-78 295.8 205 75.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.5e-78 295.8 204 76.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.3e-78 295.0 204 75.5
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 9.7e-78 293.9 204 75.5
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 9.7e-78 293.9 207 74.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 9.7e-78 293.9 207 74.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.6e-77 293.1 179 82.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-77 292.7 207 74.4
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.7e-77 292.0 178 81.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.3e-77 291.2 207 73.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.2e-77 290.8 198 76.8
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.4e-76 290.0 197 76.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-76 289.7 195 75.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.8e-76 289.7 211 73.5
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.8e-76 289.7 205 74.1
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 3.1e-76 288.9 206 74.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.1e-76 288.5 214 73.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.1e-76 288.5 189 77.2
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 4.1e-76 288.5 179 79.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 5.3e-76 288.1 197 75.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.9e-76 287.7 190 78.9
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.0e-76 287.3 205 73.2
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-75 286.6 197 74.6
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.5e-75 286.6 201 73.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.0e-75 286.2 195 74.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.6e-75 285.8 199 74.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 5.9e-75 284.6 204 73.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.0e-74 283.9 210 70.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.7e-74 283.1 205 72.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.8e-74 282.0 205 72.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.8e-74 282.0 199 73.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.0e-74 281.6 205 72.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 6.5e-74 281.2 202 72.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 198 74.2
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.9e-73 279.6 199 72.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.5e-73 279.3 225 68.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.2e-73 278.9 202 72.3
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 9.3e-73 277.3 204 72.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 6.1e-72 274.6 207 69.1
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.3e-71 272.7 205 69.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.4e-70 267.7 204 69.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.7e-70 267.3 161 82.6
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.3e-69 266.9 159 84.9
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.3e-69 266.9 225 66.2
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.7e-69 265.4 201 69.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.1e-68 263.8 195 70.3
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.4e-68 262.7 203 64.5
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 5.3e-68 261.5 188 72.9
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.9e-66 255.8 200 66.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.9e-66 255.8 204 65.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.0e-66 255.0 199 66.3
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.0e-66 255.0 193 68.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.5e-66 254.6 207 65.2
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.1e-65 253.8 205 67.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.5e-65 252.7 189 70.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.2e-65 252.3 201 67.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.2e-65 252.3 180 70.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.2e-65 251.9 201 66.7
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.2e-65 251.9 201 66.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 7.2e-65 251.1 196 66.3
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.2e-64 250.4 208 63.9
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.2e-64 250.4 202 65.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.6e-64 248.8 198 67.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.6e-64 248.4 197 66.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.0e-63 247.3 197 66.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-63 247.3 189 68.8
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.8e-63 246.5 201 63.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 3.0e-63 245.7 196 64.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.0e-63 245.7 207 65.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.7e-63 244.6 207 64.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 6.7e-63 244.6 200 62.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-62 243.8 202 64.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.0e-62 243.0 195 65.6
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.0e-62 243.0 174 69.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.6e-62 242.7 196 63.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.6e-62 242.7 158 77.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.4e-62 241.9 204 61.3
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.3e-61 240.4 199 65.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.3e-61 238.0 200 64.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.1e-60 235.7 164 75.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 3.1e-60 235.7 180 66.1
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 9.1e-60 234.2 172 66.9
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.4e-59 232.3 193 65.3
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-58 230.7 164 73.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.4e-54 215.3 208 62.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.7e-54 214.9 201 62.2
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.5e-49 200.3 126 78.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.9e-49 199.9 194 54.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.7e-48 196.1 121 81.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.6e-46 189.5 122 77.9
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.6e-46 189.5 177 56.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-45 186.0 208 55.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.8e-44 183.3 112 83.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.8e-44 183.3 154 64.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 4.1e-44 182.2 196 55.6
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 5.3e-44 181.8 170 56.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.2e-43 180.6 118 73.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.9e-42 176.0 188 58.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.2e-41 172.6 96 85.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.2e-41 172.2 154 58.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 8.0e-40 167.9 177 51.4
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 9.8e-38 161.0 104 77.9
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.7e-34 150.2 170 47.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-32 143.7 153 51.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.6e-30 136.3 102 68.6
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-28 130.6 171 48.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 6.4e-21 105.1 97 60.8
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 8.6e-18 94.7 59 71.2
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.9e-17 93.6 70 61.4
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 5.6e-17 92.0 213 32.9
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 7.3e-17 91.7 70 60.0
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.2e-16 90.9 55 74.5
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.4e-15 87.4 88 56.8
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 8.3e-13 78.2 173 31.8
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 3.2e-12 76.3 62 67.7
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 6.0e-11 72.0 40 87.5
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 7.8e-11 71.6 90 44.4
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.9e-09 67.0 38 86.8
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 3.6e-08 62.8 39 74.4


User provided reference genes

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