Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.4e-230 802.7 451 100.0
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 3.7e-175 618.6 468 78.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.1e-169 600.5 439 79.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.5e-168 596.7 453 77.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.5e-168 596.7 451 78.0
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-168 596.3 451 77.2
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-168 596.3 451 77.2
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.4e-160 568.9 451 74.1
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 4.9e-159 565.1 451 72.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.1e-158 563.9 451 71.8
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.1e-158 563.9 449 74.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.2e-157 560.5 451 71.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.6e-157 560.1 427 76.8
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.7e-156 556.6 451 72.5
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.3e-156 556.2 451 72.7
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.9e-156 555.4 450 72.9
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.9e-155 553.1 452 70.8
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.5e-155 552.7 452 74.1
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.6e-154 548.9 451 71.8
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 4.8e-154 548.5 451 72.1
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.6e-152 542.7 451 71.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 4.5e-152 542.0 451 71.6
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-151 540.0 451 70.1
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.7e-151 540.0 451 70.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 2.9e-151 539.3 441 73.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 6.4e-151 538.1 449 70.4
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.4e-151 537.7 451 69.8
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 8.4e-151 537.7 449 70.2
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-150 537.0 449 71.5
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-150 535.4 451 69.6
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.3e-150 534.3 451 69.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 4.6e-149 531.9 451 68.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 6.0e-149 531.6 451 70.7
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.0e-148 530.8 449 68.4
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.4e-147 524.6 439 70.4
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 7.4e-147 524.6 451 67.0
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.1e-146 523.1 453 69.3
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 4.8e-146 521.9 451 69.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.8e-146 521.9 459 69.1
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 9.0e-145 517.7 457 68.3
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.9e-144 514.2 454 66.7
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.9e-143 512.7 448 68.3
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 8.4e-143 511.1 462 66.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 3.2e-142 509.2 457 67.2
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.2e-141 507.3 451 66.7
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.6e-141 506.9 449 64.1
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.8e-140 503.4 426 70.2
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.9e-139 500.0 451 65.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 7.4e-139 498.0 451 64.7
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 7.4e-139 498.0 452 65.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.3e-138 497.3 451 65.2
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.1e-137 494.2 447 64.4
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.1e-137 494.2 449 67.3
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.1e-137 492.7 456 64.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 4.0e-137 492.3 452 65.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.2e-136 490.7 451 64.5
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.6e-136 489.6 451 63.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 4.5e-136 488.8 464 64.4
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 7.6e-136 488.0 451 65.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.6e-136 488.0 453 64.5
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.5e-135 485.0 451 65.2
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.2e-134 482.3 456 65.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 5.5e-134 481.9 451 65.6
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 7.1e-134 481.5 449 65.0
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 9.3e-134 481.1 460 65.2
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 6.7e-132 474.9 451 62.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-131 473.8 449 64.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.5e-131 473.8 451 65.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.5e-131 473.8 453 63.6
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.9e-131 473.4 452 62.8
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.5e-131 473.0 452 63.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.3e-131 472.6 447 64.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 7.4e-131 471.5 451 64.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 9.7e-131 471.1 452 63.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 9.7e-131 471.1 469 60.3
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 8.2e-130 468.0 464 63.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-129 466.1 449 63.9
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.2e-128 464.2 406 65.8
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.6e-128 463.0 449 62.8
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.7e-127 460.3 454 63.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.9e-127 459.5 480 61.0
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 5.0e-127 458.8 449 63.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.4e-126 457.2 440 63.6
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.4e-126 457.2 440 63.6
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.2e-126 456.1 452 63.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 4.2e-126 455.7 453 61.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 7.9e-125 451.4 449 62.1
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.1e-123 447.6 453 61.4
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-123 446.8 392 67.3
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 6.9e-121 438.3 453 60.0
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.9e-120 435.3 449 60.8
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.5e-115 420.6 426 60.8
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.1e-113 414.5 449 60.1
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.1e-113 414.5 449 59.5
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 6.7e-108 395.2 468 53.4
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-106 389.8 328 70.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.2e-104 384.4 386 62.7
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.3e-103 380.9 374 60.7
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.7e-101 372.5 327 67.3
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.2e-99 367.9 464 51.1
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.5e-99 367.5 450 52.7
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-96 357.5 401 56.1
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.7e-95 354.0 440 52.3
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.9e-94 350.5 392 55.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.8e-92 344.0 432 51.9
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 5.7e-91 339.0 470 50.9
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 5.0e-87 325.9 421 51.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.5e-86 323.6 459 46.0
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 9.5e-86 321.6 282 66.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.0e-84 318.2 273 66.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.9e-78 297.4 413 47.2
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 6.6e-71 272.3 231 69.3
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.0e-67 260.8 203 76.8
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.4e-65 253.8 348 51.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 7.3e-62 242.3 278 57.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.2e-61 241.5 245 61.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.9e-58 230.3 381 47.5
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.7e-55 221.1 198 62.1
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.4e-52 211.5 250 58.4
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.4e-51 206.5 198 64.1
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.0e-47 193.7 376 37.0
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.5e-46 190.7 371 38.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 9.6e-46 188.7 462 35.3
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.8e-45 187.2 273 46.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-44 184.9 153 70.6
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.1e-44 183.7 179 60.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.2e-42 177.6 198 57.1
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 8.7e-39 165.6 164 59.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.3e-38 163.7 472 31.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.3e-36 156.4 137 67.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 3.3e-30 137.1 133 60.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.6e-30 135.6 173 52.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.3e-26 125.2 217 45.2
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.6e-21 108.2 148 51.4
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 5.3e-20 103.2 98 62.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-19 102.1 67 82.1
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.3e-18 98.6 62 88.7
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.9e-17 94.7 107 57.9
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-13 82.0 95 56.8
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.2e-13 81.3 190 40.5
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.4e-09 68.6 68 60.3
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-07 62.0 37 78.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 1.8e-07 61.6 196 28.1


User provided reference genes

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