Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 9.0e-187 656.8 327 100.0
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.8e-139 499.6 327 77.4
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 2.8e-132 475.7 342 73.1
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 8.3e-132 474.2 332 70.8
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 1.1e-131 473.8 324 71.6
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.5e-128 462.6 330 68.2
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 2.1e-127 459.5 330 69.1
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 3.6e-127 458.8 302 76.2
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.4e-126 456.8 330 67.6
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 3.0e-126 455.7 327 67.6
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 3.7e-124 448.7 327 69.4
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 6.3e-124 448.0 327 65.7
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 8.3e-124 447.6 327 65.7
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 1.3e-121 440.3 327 64.5
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 2.8e-119 432.6 328 66.8
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 3.1e-118 429.1 334 65.0
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 5.2e-118 428.3 327 65.4
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.2e-117 427.2 333 64.6
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 5.8e-117 424.9 334 65.0
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 4.9e-116 421.8 334 63.5
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 1.9e-115 419.9 333 63.4
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.2e-115 419.1 327 66.7
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 9.2e-115 417.5 329 64.4
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 9.2e-115 417.5 329 64.7
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.6e-114 416.8 333 61.6
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 7.8e-114 414.5 352 61.1
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.1e-112 410.6 333 61.9
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 4.3e-112 408.7 312 64.7
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 7.3e-112 407.9 310 64.5
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.4e-110 403.7 336 60.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 4.0e-110 402.1 339 60.8
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 5.2e-110 401.7 330 60.3
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 8.9e-110 401.0 331 62.8
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 2.0e-109 399.8 325 62.5
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 7.5e-109 397.9 330 63.0
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 2.9e-108 396.0 304 64.1
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 2.9e-108 396.0 379 55.9
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 3.7e-108 395.6 332 60.8
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 6.4e-108 394.8 333 61.6
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 1.9e-107 393.3 301 62.8
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 4.1e-107 392.1 337 59.9
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 5.4e-107 391.7 330 60.6
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 9.2e-107 391.0 331 60.4
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 9.2e-107 391.0 323 62.2
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 1.2e-106 390.6 335 59.4
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.6e-106 390.2 249 77.9
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.7e-106 389.4 330 60.6
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 6.0e-106 388.3 335 59.4
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 7.8e-106 387.9 330 60.0
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.3e-105 386.3 333 59.8
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 8.6e-105 384.4 335 60.0
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 3.3e-104 382.5 323 61.6
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.6e-104 381.7 335 59.7
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 5.6e-104 381.7 356 58.4
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 9.5e-104 380.9 331 60.4
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.2e-103 380.6 333 58.3
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.2e-103 380.6 273 69.6
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.6e-103 380.2 331 59.2
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.4e-102 377.1 329 59.9
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 4.0e-102 375.6 336 58.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 2.0e-101 373.2 334 59.6
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 5.8e-101 371.7 352 56.0
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.3e-100 370.5 335 60.0
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 2.2e-100 369.8 335 57.9
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 3.7e-100 369.0 332 58.1
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 2.4e-99 366.3 310 56.8
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 4.1e-99 365.5 334 57.5
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 2.7e-98 362.8 334 56.6
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 1.6e-95 353.6 355 53.2
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 2.1e-95 353.2 352 52.3
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 6.2e-95 351.7 357 51.0
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.1e-94 350.9 355 51.5
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.4e-94 350.5 362 51.4
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.5e-93 347.1 353 51.6
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 3.4e-93 345.9 360 51.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 4.4e-93 345.5 349 53.0
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 1.7e-92 343.6 351 54.4
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 4.9e-92 342.0 359 50.7
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 4.9e-92 342.0 323 55.7
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.1e-91 340.9 342 52.0
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.1e-91 340.9 355 55.2
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 9.3e-91 337.8 344 54.4
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.2e-90 337.4 348 56.0
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.0e-89 334.3 326 52.1
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 3.0e-89 332.8 361 53.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 3.9e-89 332.4 328 52.7
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 7.3e-88 328.2 375 49.3
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 9.6e-88 327.8 345 53.0
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 1.3e-87 327.4 327 52.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.8e-87 326.2 330 52.7
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 3.6e-87 325.9 327 52.0
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.6e-87 325.9 364 47.8
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-86 323.6 364 47.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.4e-86 323.2 341 53.4
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 3.1e-86 322.8 366 47.5
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.0e-86 322.4 344 50.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 4.0e-86 322.4 366 46.7
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.9e-83 313.5 327 50.5
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.1e-80 304.3 330 52.4
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.4e-70 270.8 270 53.7
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 4.0e-62 242.7 285 47.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 3.9e-57 226.1 333 40.8
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 4.3e-56 222.6 201 53.7
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 7.4e-56 221.9 333 40.2
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.1e-54 218.0 179 60.9
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 9.4e-51 204.9 245 41.2
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.1e-48 198.0 322 38.5
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.7e-47 194.1 318 37.7
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 2.5e-43 180.3 222 41.0
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 7.9e-42 175.3 210 46.7
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.1e-38 162.9 225 39.6
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.9e-36 156.8 210 39.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.5e-36 155.2 221 37.6
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.9e-35 154.1 221 37.6
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.2e-35 152.9 232 39.7
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.5e-35 152.5 209 41.6
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 9.4e-35 151.8 217 39.2
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.1e-34 150.6 217 35.9
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.2e-33 146.0 212 35.8
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.8e-31 140.2 86 81.4
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.9e-29 132.5 368 29.3
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 3.8e-28 129.8 121 56.2
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 8.3e-23 112.1 117 53.0
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 5.4e-22 109.4 185 35.7
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 4.5e-21 106.3 129 47.3
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 2.7e-18 97.1 96 50.0
Glyma.06G207650 Glycine max HOM05D002801 ORTHO05D003002 2.9e-07 60.5 44 65.9


User provided reference genes

Program Settings