Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.0e-204 716.5 357 100.0
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 4.9e-146 521.5 331 81.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.2e-145 518.5 346 79.5
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 4.2e-145 518.5 331 81.9
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.2e-137 492.3 338 75.7
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 4.6e-136 488.4 346 72.8
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.8e-135 486.5 338 75.1
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.8e-135 486.5 338 74.9
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.1e-134 483.8 338 74.0
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.5e-134 482.6 352 73.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.3e-134 481.9 327 76.1
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.3e-133 480.3 347 72.6
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.6e-133 479.9 327 75.8
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.6e-133 479.9 327 75.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 2.8e-133 479.2 339 74.0
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 4.8e-133 478.4 328 75.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 8.2e-133 477.6 335 72.8
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 8.2e-133 477.6 333 74.5
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.8e-132 476.5 344 73.8
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 2.4e-132 476.1 342 72.2
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 3.1e-132 475.7 345 71.3
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 4.1e-132 475.3 331 74.3
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 4.1e-132 475.3 346 72.5
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 5.3e-132 474.9 345 72.2
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 6.9e-132 474.6 347 72.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 6.9e-132 474.6 346 73.7
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.0e-132 474.2 344 72.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.2e-131 473.8 332 75.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.5e-131 473.4 328 73.8
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 2.6e-131 472.6 331 74.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 4.5e-131 471.9 329 72.6
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 4.5e-131 471.9 346 74.6
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 5.9e-131 471.5 329 72.0
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 5.9e-131 471.5 331 73.1
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.0e-130 470.7 344 72.1
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.0e-130 470.7 348 70.7
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.3e-130 470.3 336 72.9
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.7e-130 469.9 343 70.8
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.7e-130 469.9 333 72.7
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.7e-130 469.9 339 72.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 2.2e-130 469.5 328 75.0
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.9e-130 469.2 338 72.5
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 6.5e-130 468.0 329 71.7
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 6.5e-130 468.0 329 71.7
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 6.5e-130 468.0 329 71.7
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 6.5e-130 468.0 329 71.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 8.5e-130 467.6 334 73.7
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 8.5e-130 467.6 336 73.2
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 8.5e-130 467.6 339 72.0
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.1e-129 467.2 341 72.7
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.1e-129 467.2 341 72.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.4e-129 466.8 339 74.3
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.4e-129 466.8 329 71.7
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-129 466.1 329 71.4
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.5e-129 466.1 336 72.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 3.2e-129 465.7 336 71.7
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 4.2e-129 465.3 322 73.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 5.5e-129 464.9 329 73.6
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 7.2e-129 464.5 344 72.4
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 9.3e-129 464.2 336 70.8
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.2e-128 463.8 348 71.8
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 2.1e-128 463.0 341 73.3
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.7e-128 462.6 338 72.2
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.6e-128 462.2 350 71.7
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.6e-128 462.2 328 73.5
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.3e-127 460.3 330 73.0
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.8e-127 459.9 360 67.2
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 5.1e-127 458.4 347 72.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 6.7e-127 458.0 343 70.6
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 6.7e-127 458.0 382 64.7
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 3.3e-126 455.7 370 65.7
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-125 453.8 334 70.4
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.2e-125 453.0 343 70.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.7e-125 452.2 341 69.8
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 4.8e-125 451.8 326 73.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 4.8e-125 451.8 321 74.1
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 9.1e-124 447.6 335 69.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.6e-123 446.0 341 69.2
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 7.7e-123 444.5 339 68.4
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 7.7e-123 444.5 342 70.5
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.3e-122 443.7 338 69.8
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.8e-122 442.2 351 67.0
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 5.5e-121 438.3 348 66.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 5.5e-121 438.3 332 69.6
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 7.2e-121 438.0 350 66.0
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.2e-120 437.2 341 69.8
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.6e-120 435.6 332 71.1
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.7e-118 428.3 359 63.5
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.7e-117 426.8 313 71.9
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 6.3e-117 424.9 339 65.8
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.4e-113 413.7 295 76.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-113 413.7 339 68.1
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.2e-113 412.5 305 73.8
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 4.2e-113 412.1 310 71.0
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.1e-112 409.8 285 73.3
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 2.3e-111 406.4 333 64.6
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.1e-110 404.1 336 66.7
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.5e-110 403.7 292 70.2
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 3.3e-110 402.5 325 68.9
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.4e-110 401.4 307 71.7
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.3e-109 400.6 306 70.9
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.1e-108 397.5 273 71.8
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-108 397.1 359 62.7
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.8e-108 396.7 307 70.7
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 2.5e-105 386.3 279 69.5
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.2e-104 384.0 308 66.9
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.8e-103 380.2 293 70.3
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 8.8e-103 377.9 305 67.2
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 7.5e-102 374.8 255 78.8
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 6.3e-101 371.7 297 66.3
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 7.0e-100 368.2 301 65.8
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 7.7e-99 364.8 414 53.9
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-95 354.0 296 64.5
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.0e-95 352.4 236 74.2
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 9.8e-94 347.8 236 73.7
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 5.9e-91 338.6 200 84.5
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.0e-90 337.8 399 52.4
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.9e-90 336.3 330 57.6
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.2e-86 324.3 231 77.1
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 5.7e-86 322.0 327 53.2
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 7.5e-86 321.6 333 52.0
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.3e-85 320.9 270 68.1
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 1.1e-84 317.8 245 73.1
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.8e-84 317.0 260 70.4
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.6e-83 313.9 263 66.9
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.7e-82 310.5 324 54.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 3.3e-81 306.2 324 52.2
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.6e-78 296.6 172 82.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.1e-76 291.2 260 56.2
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.8e-71 273.9 253 61.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.2e-69 266.9 218 69.3
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 4.9e-69 265.8 319 46.1
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.8e-63 247.3 230 60.9
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.2e-59 234.6 195 65.6
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.7e-58 230.7 350 43.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.4e-44 184.5 187 57.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.6e-43 181.0 163 63.2
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.1e-35 154.1 154 57.1
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 3.5e-27 126.7 80 72.5
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.6e-24 117.9 55 89.1
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-23 114.8 55 87.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.8e-23 114.4 125 55.2
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 4.0e-23 113.2 54 87.0
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 4.0e-23 113.2 54 87.0
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 6.9e-23 112.5 55 87.3
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 6.9e-23 112.5 55 87.3
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 7.6e-22 109.0 94 61.7
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.9e-09 67.8 55 61.8
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 2.2e-08 64.3 40 77.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 5.3e-07 59.7 42 66.7


User provided reference genes

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