Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.2e-182 641.0 333 100.0
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 9.5e-160 567.0 316 95.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 8.2e-119 431.0 317 71.6
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 5.3e-118 428.3 317 72.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.7e-116 423.3 320 71.6
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 4.3e-112 408.7 318 71.1
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 7.2e-107 391.3 319 69.0
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.0e-96 356.7 319 61.8
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 7.0e-94 348.2 330 60.0
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.0e-94 348.2 322 60.9
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.7e-93 344.7 320 60.3
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.7e-90 336.3 318 59.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 3.6e-90 335.9 317 59.6
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.1e-86 322.4 321 58.3
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.1e-86 322.4 318 56.6
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 4.1e-86 322.4 318 56.6
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 5.3e-86 322.0 318 57.5
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.6e-85 320.5 317 58.0
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.5e-85 319.3 318 56.0
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 6.5e-84 315.1 310 58.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 5.5e-83 312.0 325 55.1
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 8.0e-82 308.1 318 56.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.0e-80 303.5 335 51.9
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.0e-80 303.5 335 51.9
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 5.7e-80 302.0 313 55.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 9.8e-80 301.2 323 55.1
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 9.8e-80 301.2 317 56.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.8e-79 299.7 341 55.7
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.7e-79 299.3 312 55.1
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.1e-78 296.2 300 56.0
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-77 294.3 320 53.4
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 2.0e-77 293.5 301 55.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.9e-76 289.7 320 52.8
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 5.0e-76 288.9 304 56.9
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.5e-75 287.3 298 56.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.5e-75 287.3 319 54.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 4.2e-75 285.8 319 53.9
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.2e-74 284.3 297 53.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 4.7e-74 282.3 299 54.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 2.3e-73 280.0 311 53.4
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.3e-73 280.0 313 53.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 7.5e-72 275.0 302 51.7
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-71 273.9 310 52.9
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 3.7e-71 272.7 315 52.7
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 6.3e-71 271.9 315 52.7
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-70 270.8 315 52.7
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.4e-70 270.8 302 52.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.2e-70 269.6 315 52.4
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 5.4e-70 268.9 300 54.0
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.0e-70 268.5 315 53.3
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.2e-69 267.7 295 51.5
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.9e-68 263.1 285 52.6
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.9e-68 262.7 309 50.8
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 8.6e-68 261.5 331 49.2
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.1e-67 261.2 278 54.7
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.3e-67 259.2 308 50.6
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 7.3e-67 258.5 286 52.4
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.7e-66 255.8 297 49.5
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 6.8e-65 251.9 294 51.0
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 6.8e-65 251.9 322 50.9
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 8.9e-65 251.5 333 46.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.2e-64 251.1 297 52.2
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 2.0e-64 250.4 298 50.3
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 3.4e-64 249.6 304 49.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 5.8e-64 248.8 289 53.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.3e-63 247.7 309 46.9
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.3e-63 247.7 318 49.1
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.7e-63 247.3 312 47.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 2.2e-63 246.9 310 47.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 4.9e-63 245.7 284 50.7
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 6.4e-63 245.4 310 47.4
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.3e-63 245.0 284 50.4
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.9e-62 243.8 309 47.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.4e-62 243.4 302 48.3
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 4.1e-62 242.7 293 48.1
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.1e-62 242.7 298 47.3
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 7.0e-62 241.9 303 47.5
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 7.0e-62 241.9 297 49.2
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 7.0e-62 241.9 298 48.3
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.2e-61 241.1 281 52.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.2e-61 241.1 290 47.9
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.3e-60 236.9 251 54.2
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 2.3e-60 236.9 301 48.2
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 3.0e-60 236.5 313 47.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 3.9e-60 236.1 314 47.1
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.9e-60 236.1 284 49.3
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 5.0e-60 235.7 312 46.5
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 8.6e-60 235.0 312 45.8
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-59 234.6 293 49.5
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.1e-59 234.6 297 49.5
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.9e-59 233.8 316 45.6
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.9e-59 233.8 314 47.1
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.5e-59 233.4 297 50.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 4.3e-59 232.6 293 47.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.3e-59 232.6 315 46.7
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 9.5e-59 231.5 314 46.8
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 9.5e-59 231.5 314 46.8
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.8e-58 229.9 265 51.3
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 3.6e-58 229.6 299 49.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.4e-57 227.6 299 46.8
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 3.1e-57 226.5 307 46.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 4.0e-57 226.1 311 49.5
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 8.9e-57 224.9 303 46.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.2e-56 224.6 302 47.0
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.5e-56 224.2 294 46.6
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.5e-56 224.2 198 61.1
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.6e-56 223.4 255 53.7
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 3.4e-56 223.0 305 46.9
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.7e-55 219.5 302 45.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 4.9e-55 219.2 301 44.9
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 4.1e-54 216.1 289 46.0
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 3.5e-53 213.0 296 43.9
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.0e-52 209.9 305 44.9
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 8.6e-52 208.4 306 45.1
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 9.5e-51 204.9 294 46.3
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-50 204.5 294 46.3
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 9.9e-48 194.9 281 43.4
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.4e-38 163.7 271 41.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.2e-38 163.3 271 41.0
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.5e-35 154.5 142 60.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 2.4e-33 147.1 281 37.7
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 5.4e-30 136.0 237 40.5
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.5e-27 127.1 162 50.0
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 6.2e-26 122.5 118 58.5
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 6.2e-26 122.5 170 44.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 2.8e-18 97.1 267 31.1
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.8e-15 86.7 115 49.6
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.5e-14 84.0 158 39.2
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 9.3e-14 82.0 94 50.0
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.7e-11 72.8 88 50.0


User provided reference genes

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