Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.7e-72 273.5 133 100.0
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.3e-63 245.0 154 83.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.9e-26 122.9 63 93.7
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.8e-24 116.3 61 91.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.0e-24 115.5 61 88.5
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.0e-24 115.5 61 88.5
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 4.0e-24 115.2 65 83.1
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 4.0e-24 115.2 61 90.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 5.2e-24 114.8 61 88.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 5.2e-24 114.8 61 88.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 5.2e-24 114.8 61 88.5
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 5.2e-24 114.8 61 88.5
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 6.8e-24 114.4 61 88.5
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 6.8e-24 114.4 59 91.5
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.2e-23 113.6 63 84.1
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.2e-23 113.6 61 85.2
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.5e-23 113.2 61 86.9
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-23 113.2 61 88.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.5e-23 113.2 61 88.5
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.5e-23 113.2 61 85.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.5e-23 113.2 61 90.2
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.0e-23 112.8 61 85.2
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.0e-23 112.8 61 86.9
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.0e-23 112.8 61 86.9
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 2.6e-23 112.5 61 86.9
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.4e-23 112.1 61 86.9
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.4e-23 111.7 61 85.2
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 4.4e-23 111.7 61 85.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 4.4e-23 111.7 61 86.9
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 4.4e-23 111.7 61 85.2
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 4.4e-23 111.7 61 85.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 4.4e-23 111.7 61 86.9
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 5.7e-23 111.3 61 83.6
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 5.7e-23 111.3 61 83.6
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 5.7e-23 111.3 61 88.5
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 7.5e-23 110.9 61 85.2
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 9.8e-23 110.5 61 85.2
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.8e-23 110.5 61 86.9
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 9.8e-23 110.5 60 88.3
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.3e-22 110.2 61 86.9
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.3e-22 110.2 61 85.2
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.7e-22 109.8 61 85.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.7e-22 109.8 61 86.9
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.2e-22 109.4 59 84.7
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.8e-22 109.0 61 85.2
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.7e-22 108.6 61 83.6
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.7e-22 108.6 61 82.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.7e-22 108.6 61 86.9
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 3.7e-22 108.6 61 83.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 3.7e-22 108.6 61 86.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.8e-22 108.2 61 85.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 4.8e-22 108.2 63 81.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.8e-22 108.2 61 85.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.8e-22 108.2 61 85.2
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 6.3e-22 107.8 61 82.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 6.3e-22 107.8 61 85.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 6.3e-22 107.8 61 83.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 8.3e-22 107.5 61 82.0
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 8.3e-22 107.5 61 82.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 8.3e-22 107.5 61 85.2
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.1e-21 107.1 61 83.6
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.4e-21 106.7 61 83.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.4e-21 106.7 61 82.0
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.8e-21 106.3 57 89.5
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.8e-21 106.3 60 83.3
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-21 106.3 60 83.3
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-21 106.3 60 83.3
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-21 106.3 60 83.3
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-21 106.3 60 83.3
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 78.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 78.7
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 80.3
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.1e-21 105.5 61 80.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 4.1e-21 105.1 59 86.4
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 80.3
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 4.1e-21 105.1 61 83.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 5.4e-21 104.8 61 80.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.0e-21 104.4 61 80.3
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 9.1e-21 104.0 61 82.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 9.1e-21 104.0 61 82.0
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 9.1e-21 104.0 61 80.3
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-20 103.6 60 81.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-20 103.6 60 81.7
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.2e-20 103.6 61 78.7
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.6e-20 103.2 61 80.3
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-20 103.2 61 77.0
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.6e-20 103.2 61 78.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.6e-20 103.2 61 78.7
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.0e-20 102.8 61 82.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 2.0e-20 102.8 61 82.0
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.7e-20 102.4 61 78.7
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.7e-20 102.4 61 78.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.5e-20 102.1 59 83.1
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 3.5e-20 102.1 61 78.7
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 3.5e-20 102.1 120 49.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 4.5e-20 101.7 61 78.7
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.5e-20 101.7 60 80.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 4.5e-20 101.7 63 73.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 5.9e-20 101.3 61 78.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 5.9e-20 101.3 61 75.4
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 7.7e-20 100.9 61 77.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 7.7e-20 100.9 61 78.7
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-19 100.1 61 78.7
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.3e-19 99.4 62 77.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.8e-19 98.6 61 77.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 3.8e-19 98.6 61 78.7
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.1e-18 97.1 61 75.4
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.5e-18 95.9 62 77.4
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.5e-18 95.9 61 73.8
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 3.3e-18 95.5 61 75.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 4.2e-18 95.1 61 73.8
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.8e-17 92.4 61 72.1
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.6e-17 92.0 66 68.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 2.6e-15 85.9 61 67.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 5.7e-15 84.7 61 67.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.7e-14 83.2 61 73.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.8e-13 79.7 61 60.7
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.0e-13 77.8 47 70.2
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.0e-12 76.3 59 57.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.7e-11 73.2 47 68.1
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.1e-10 70.5 35 91.4
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-08 63.5 40 67.5
CSS0017695 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 3.4e-07 58.9 27 96.3
CSS0046469 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 3.4e-07 58.9 27 96.3
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.4e-06 54.7 33 72.7


User provided reference genes

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