Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 1.9e-107 392.5 199 100.0
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.6e-82 309.7 188 84.0
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 1.7e-71 273.1 188 75.0
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 3.8e-71 271.9 176 77.8
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 8.7e-68 260.8 224 62.9
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 4.5e-64 248.4 187 69.0
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.2e-63 246.1 185 68.1
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 3.6e-61 238.8 184 64.1
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 1.4e-60 236.9 187 65.8
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 6.7e-60 234.6 187 64.7
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 6.7e-60 234.6 186 64.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.4e-59 231.9 187 64.7
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 7.4e-59 231.1 187 62.6
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 7.4e-59 231.1 187 62.6
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.2e-58 229.6 185 62.7
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 3.7e-58 228.8 189 62.4
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 4.8e-58 228.4 189 61.9
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 4.1e-57 225.3 185 61.1
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 4.1e-57 225.3 184 62.5
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 5.3e-57 224.9 189 60.3
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 6.9e-57 224.6 192 61.5
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.9e-57 224.6 171 64.9
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 6.9e-57 224.6 194 60.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 6.9e-57 224.6 194 60.3
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.6e-56 222.6 198 61.1
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 4.5e-56 221.9 198 60.1
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.7e-55 219.9 191 61.8
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 5.0e-55 218.4 161 66.5
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 5.0e-55 218.4 191 59.7
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 6.5e-55 218.0 178 58.4
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 1.4e-54 216.9 182 56.6
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.9e-54 216.5 201 57.7
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 9.4e-54 214.2 186 58.6
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 9.4e-54 214.2 193 57.5
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.2e-53 213.8 201 56.7
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.6e-53 213.4 191 60.7
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-53 213.0 188 60.6
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-53 213.0 188 60.1
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 2.1e-53 213.0 197 59.9
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 6.1e-53 211.5 190 58.9
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 6.1e-53 211.5 189 56.1
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.8e-52 209.9 189 55.6
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.3e-52 209.5 222 52.3
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 3.0e-52 209.1 186 56.5
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 6.7e-52 208.0 188 57.4
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 8.8e-52 207.6 142 68.3
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.4e-51 205.3 185 58.9
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 9.7e-51 204.1 189 59.3
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 9.7e-51 204.1 206 57.3
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 9.7e-51 204.1 186 55.4
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.3e-50 203.8 192 55.7
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.8e-50 202.6 132 71.2
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.8e-50 202.6 192 57.8
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 8.2e-50 201.1 163 63.8
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 1.4e-49 200.3 164 59.8
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 9.1e-49 197.6 198 55.6
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.2e-48 197.2 184 56.5
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.0e-48 196.4 184 58.2
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 1.3e-47 193.7 204 53.9
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.7e-47 193.4 221 48.9
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.2e-47 193.0 158 63.3
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 7.2e-46 188.0 192 53.6
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 7.2e-46 188.0 191 54.5
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 6.1e-45 184.9 197 51.8
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 2.3e-44 183.0 201 48.8
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 2.3e-44 183.0 193 51.3
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 5.2e-44 181.8 166 54.2
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 8.8e-44 181.0 145 58.6
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 8.8e-44 181.0 216 48.1
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.0e-43 179.9 193 52.3
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 4.4e-43 178.7 192 51.6
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 4.4e-43 178.7 197 48.7
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 5.7e-43 178.3 189 51.3
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 8.2e-42 174.5 142 63.4
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 5.0e-39 165.2 167 54.5
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 3.2e-38 162.5 193 49.7
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.2e-38 162.2 190 47.4
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 5.5e-38 161.8 194 49.5
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 7.2e-38 161.4 190 48.9
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 9.4e-38 161.0 172 50.6
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 9.4e-38 161.0 193 48.7
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 2.7e-37 159.5 190 48.4
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 3.6e-37 159.1 139 56.8
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 3.6e-37 159.1 102 73.5
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 1.0e-36 157.5 141 56.0
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 4.0e-36 155.6 190 47.9
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.0e-35 153.3 102 70.6
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 2.4e-33 146.4 135 56.3
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.2e-31 139.8 105 67.6
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 2.0e-27 126.7 80 75.0
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 4.4e-27 125.6 83 72.3
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 9.8e-27 124.4 203 39.9
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 2.8e-26 122.9 120 55.8
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 3.1e-25 119.4 85 68.2
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 5.4e-25 118.6 79 70.9
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.7e-24 116.3 142 43.7
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 5.0e-23 112.1 105 56.2
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 5.0e-23 112.1 105 56.2
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 6.6e-23 111.7 106 54.7
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 1.2e-21 107.5 105 56.2
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 8.0e-21 104.8 76 61.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 8.0e-21 104.8 73 65.8
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 8.9e-20 101.3 105 41.9
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.5e-19 100.5 59 76.3
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 2.0e-19 100.1 106 43.4
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 3.4e-19 99.4 72 65.3
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 4.4e-19 99.0 106 39.6
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 2.9e-18 96.3 189 34.9
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 4.9e-18 95.5 112 48.2
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 6.4e-18 95.1 72 56.9
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 6.4e-18 95.1 72 56.9
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.4e-17 93.2 68 64.7
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.6e-16 90.5 90 53.3
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 1.1e-14 84.3 52 73.1
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 5.2e-12 75.5 111 34.2
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.9e-10 68.9 52 63.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 4.9e-10 68.9 52 63.5
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 8.3e-10 68.2 51 62.7
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 2.0e-08 63.5 53 58.5


User provided reference genes

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