Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-68 263.1 138 100.0
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-61 240.0 152 86.8
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.1e-59 231.1 152 83.6
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.2e-54 215.7 140 83.6
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.6e-39 166.4 160 63.1
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.6e-36 155.2 138 60.1
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.3e-33 146.7 150 53.3
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.4e-26 122.1 147 45.6
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-19 99.8 155 40.6
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-19 99.4 130 39.2
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.9e-19 97.4 138 42.8
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-18 97.1 140 39.3
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-18 96.7 148 37.8
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.4e-18 95.5 138 39.9
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.4e-18 95.1 148 38.5
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.8e-18 94.7 148 38.5
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.7e-17 93.2 148 37.8
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.7e-17 93.2 153 38.6
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.9e-17 92.4 150 38.0
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.9e-17 91.7 130 36.9
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 4.9e-17 91.7 153 38.6
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.9e-17 91.7 148 37.2
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-14 82.8 147 36.7
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.3e-14 82.8 121 38.8
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.0e-14 82.4 120 40.0
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.0e-14 82.4 147 34.7
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 3.9e-14 82.0 148 35.1
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.0e-14 81.6 147 38.1
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 8.6e-14 80.9 145 34.5
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-13 80.1 83 48.2
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.5e-13 80.1 149 35.6
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.5e-13 79.3 131 35.9
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 2.5e-13 79.3 145 37.2
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.6e-13 78.2 139 36.7
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.3e-13 77.8 148 34.5
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 2.8e-12 75.9 130 31.5
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.6e-12 75.5 122 35.2
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 3.6e-12 75.5 148 32.4
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.0e-11 72.0 145 33.1
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.0e-11 72.0 128 35.2
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 5.2e-11 71.6 149 30.9
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.8e-11 71.2 100 39.0
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 8.9e-11 70.9 133 32.3
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-10 70.5 147 31.3
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.5e-10 70.1 147 31.3
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.5e-10 70.1 128 35.2
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 2.0e-10 69.7 141 32.6
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 7.5e-10 67.8 119 36.1
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.8e-10 67.4 81 39.5
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 2.2e-09 66.2 141 34.8
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.2e-09 66.2 110 35.5
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 2.9e-09 65.9 140 32.9
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 2.9e-09 65.9 135 31.9
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.9e-09 65.9 135 31.9
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.4e-08 63.5 151 30.5
CSS0044445 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 1.9e-08 63.2 63 47.6
Lj3g0002323 Lotus japonicus HOM05D000003 ORTHO05D007254 2.4e-08 62.8 137 29.2
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 4.1e-08 62.0 77 42.9
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 4.1e-08 62.0 91 40.7
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 5.4e-08 61.6 150 26.7
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 5.4e-08 61.6 154 30.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 5.4e-08 61.6 83 41.0
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.1e-08 61.2 131 34.4
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 7.1e-08 61.2 150 26.7
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 1.2e-07 60.5 149 31.5
COL.COLO4_36554 Corchorus olitorius HOM05D000003 ORTHO05D015627 1.6e-07 60.1 75 40.0
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 2.1e-07 59.7 147 26.5
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-07 58.9 76 38.2
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 3.5e-07 58.9 151 30.5
Lj2g0023892 Lotus japonicus HOM05D000003 ORTHO05D007254 3.5e-07 58.9 148 29.7
FAN01G1363 Fragaria x ananassa HOM05D011624 ORTHO05D014221 4.6e-07 58.5 134 26.9
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 7.8e-07 57.8 155 24.5
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.7e-06 56.6 139 33.8
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.7e-06 56.6 98 35.7
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.7e-06 56.6 134 29.9
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 2.3e-06 56.2 149 24.8
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 3.9e-06 55.5 146 32.2
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 3.9e-06 55.5 127 30.7
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 6.6e-06 54.7 155 32.3
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 6.6e-06 54.7 108 34.3
Lj3C625T2 Lonicera japonica HOM05D008183 ORTHO05D007254 8.6e-06 54.3 83 41.0


User provided reference genes

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