Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.5e-245 851.7 427 100.0
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 4.3e-165 585.1 435 70.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.5e-157 560.1 427 69.3
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.8e-156 555.8 436 68.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 7.2e-144 514.6 425 63.3
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.0e-138 496.5 439 61.7
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.9e-137 492.7 424 60.8
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 6.5e-137 491.5 425 61.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 7.2e-136 488.0 429 58.7
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.7e-135 485.3 429 57.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.0e-134 484.2 421 59.6
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.3e-132 477.2 443 59.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.8e-129 465.7 388 64.2
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-128 463.4 430 56.5
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 7.2e-128 461.5 430 57.0
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 5.2e-126 455.3 425 56.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.8e-125 451.1 426 56.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-124 450.7 431 55.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.1e-123 446.0 444 55.4
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.3e-121 439.9 427 54.1
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.6e-119 432.6 438 55.5
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.7e-119 432.2 433 55.9
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.1e-119 431.8 438 53.4
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.7e-116 423.7 432 52.1
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.3e-116 421.4 432 51.9
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.0e-115 418.3 433 52.4
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.2e-115 417.9 434 53.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.3e-113 414.1 434 52.8
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 6.6e-113 411.8 425 52.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.6e-113 411.4 323 68.4
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.1e-110 404.4 425 53.2
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.1e-110 404.4 428 50.9
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.2e-110 402.1 400 55.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 5.8e-109 398.7 422 53.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.1e-107 394.4 429 52.0
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.4e-107 394.0 424 51.9
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.4e-107 393.3 439 49.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 3.2e-107 392.9 424 51.9
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.0e-107 391.7 424 51.9
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.6e-106 390.6 427 50.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.0e-105 387.9 424 51.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-105 387.5 432 49.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 8.6e-105 384.8 439 50.8
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-104 384.0 424 51.2
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-104 383.6 356 59.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 2.5e-104 383.3 436 50.9
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.6e-104 382.1 450 47.1
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 7.3e-104 381.7 441 49.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 7.3e-104 381.7 445 49.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.8e-103 379.8 426 51.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 8.1e-103 378.3 451 48.6
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.9e-101 371.3 336 58.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 9.9e-101 371.3 428 47.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 9.9e-101 371.3 427 49.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.7e-100 370.5 428 50.2
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.7e-100 370.5 404 50.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.7e-100 369.4 428 50.7
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 7.1e-99 365.2 423 48.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.6e-98 362.5 427 51.5
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 7.8e-98 361.7 428 47.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.0e-97 361.3 426 49.5
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.7e-97 360.5 439 47.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.9e-97 359.4 441 47.4
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 6.6e-97 358.6 426 48.1
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.1e-96 357.8 441 47.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.9e-96 357.1 427 48.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.5e-96 354.8 432 49.1
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.8e-95 353.2 425 47.3
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 8.1e-95 351.7 428 45.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.8e-94 350.5 433 50.8
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-94 350.5 430 47.4
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.4e-94 350.1 439 47.6
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-93 347.4 428 48.6
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.5e-93 347.4 428 46.5
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.4e-93 346.3 432 47.0
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 7.6e-93 345.1 446 46.6
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 7.6e-93 345.1 426 48.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 7.6e-93 345.1 437 49.0
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.9e-93 344.7 428 47.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.9e-93 344.7 428 47.4
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 9.9e-93 344.7 431 47.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 6.4e-92 342.0 435 48.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 6.4e-92 342.0 383 51.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 8.4e-92 341.7 439 45.3
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.4e-91 340.9 444 46.6
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 4.6e-90 335.9 352 52.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 3.9e-89 332.8 427 45.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 5.1e-89 332.4 405 47.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.5e-88 330.9 442 45.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 5.6e-88 328.9 434 45.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.1e-87 327.0 428 44.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.8e-87 326.6 433 43.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.8e-86 323.9 488 39.5
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-86 323.9 425 44.5
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.4e-86 323.6 425 45.4
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.9e-86 322.0 431 44.3
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 9.0e-86 321.6 433 43.6
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-85 320.1 432 43.5
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.4e-85 319.3 452 45.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.6e-85 318.5 432 43.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 2.9e-84 316.6 427 45.0
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.1e-83 314.7 441 44.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-83 314.7 434 42.6
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 3.2e-83 313.2 434 43.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.2e-83 312.8 433 43.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.0e-81 308.1 451 44.6
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.3e-81 307.8 437 43.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.6e-81 305.4 431 42.7
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.8e-79 300.1 429 38.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 6.4e-76 288.9 430 41.9
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 7.9e-74 282.0 441 39.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.0e-73 281.6 431 39.9
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 5.6e-72 275.8 356 46.3
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-71 274.2 433 40.0
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.5e-67 260.4 422 37.9
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 9.3e-67 258.5 423 40.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.5e-64 250.4 418 39.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.1e-63 247.3 416 39.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 2.1e-63 247.3 347 43.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.2e-63 245.4 423 37.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.6e-58 231.1 391 38.6
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.5e-58 229.9 182 65.4
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 4.6e-58 229.6 297 43.8
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.0e-57 228.4 422 33.9
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.8e-57 227.6 425 34.4
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.0e-57 226.9 274 47.1
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.3e-56 223.4 274 47.4
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 6.9e-54 215.7 372 37.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 9.7e-48 195.3 432 34.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-40 171.8 170 54.1
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.3e-39 168.3 283 37.8
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.6e-37 160.6 436 31.7
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.2e-35 153.7 229 41.5
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 4.8e-31 139.8 198 43.4
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 6.3e-31 139.4 239 38.9
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-27 127.9 151 47.7
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.9e-27 127.9 151 47.7
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 5.5e-27 126.3 151 47.0
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 5.5e-27 126.3 151 47.0
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 8.0e-26 122.5 142 47.2
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.0e-25 120.6 128 57.0
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.0e-24 117.9 393 28.0
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 2.2e-20 104.4 174 36.8
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.9e-20 104.0 83 65.1
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 9.8e-16 89.0 270 30.7
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.9e-12 77.4 117 44.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.0e-12 76.6 61 65.6
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 7.2e-11 72.8 129 37.2
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 9.5e-11 72.4 94 44.7
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-10 71.6 62 54.8
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.4e-09 68.6 78 46.2
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.4e-09 68.6 78 46.2
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-08 65.5 68 44.1
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.6e-08 64.3 83 39.8
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 4.4e-08 63.5 85 42.4
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.7e-08 63.2 64 48.4
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.7e-08 63.2 64 48.4
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 7.5e-08 62.8 190 26.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 9.8e-08 62.4 67 49.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 9.8e-08 62.4 67 49.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 9.8e-08 62.4 67 49.3
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.2e-07 61.2 60 46.7
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 8.3e-07 59.3 54 53.7


User provided reference genes

Program Settings