Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.6e-91 337.8 162 100.0
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.3e-31 138.3 135 54.8
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.0e-23 111.3 116 54.3
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 7.2e-20 101.3 128 47.7
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.4e-18 97.1 136 41.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-18 96.3 121 44.6
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-18 95.9 133 41.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.8e-18 94.7 129 41.9
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 4.4e-17 92.0 133 38.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 9.8e-17 90.9 114 42.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.7e-16 90.1 146 37.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.2e-16 89.7 114 42.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-16 89.7 114 43.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-16 89.7 114 43.9
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-16 89.4 146 35.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.7e-16 89.0 143 35.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.7e-16 89.0 119 41.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.8e-16 88.6 146 36.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.3e-16 87.8 114 43.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 8.3e-16 87.8 137 38.0
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.1e-15 87.4 114 41.2
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.4e-15 87.0 114 43.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.4e-15 87.0 114 43.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.8e-15 86.7 114 42.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.8e-15 86.7 146 37.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.8e-15 86.7 114 42.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.8e-15 86.7 114 42.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.4e-15 86.3 114 42.1
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.4e-15 86.3 129 38.8
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.4e-15 86.3 129 38.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.4e-15 86.3 129 38.8
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.1e-15 85.9 114 42.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.1e-15 85.9 133 37.6
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.1e-15 85.9 133 37.6
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.1e-15 85.5 153 35.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 4.1e-15 85.5 114 42.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.1e-15 85.5 114 42.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.1e-15 85.5 129 38.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.1e-15 85.5 114 42.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 4.1e-15 85.5 114 42.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.1e-15 85.5 114 41.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.4e-15 85.1 114 42.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 5.4e-15 85.1 133 38.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.4e-15 85.1 146 38.4
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 5.4e-15 85.1 114 43.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 5.4e-15 85.1 114 40.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.4e-15 85.1 129 38.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.4e-15 85.1 129 38.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 7.0e-15 84.7 129 38.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 7.0e-15 84.7 114 43.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 7.0e-15 84.7 115 42.6
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-14 84.0 114 41.2
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.2e-14 84.0 114 42.1
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.2e-14 84.0 114 40.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.6e-14 83.6 114 41.2
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-14 83.6 114 42.1
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-14 83.6 114 40.4
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.0e-14 83.2 114 42.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.0e-14 83.2 138 37.0
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-14 83.2 114 41.2
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.0e-14 83.2 114 41.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.5e-14 82.4 144 36.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.5e-14 82.0 114 41.2
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 5.9e-14 81.6 138 34.1
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 5.9e-14 81.6 114 41.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.7e-14 81.3 114 38.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.0e-13 80.9 133 35.3
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-13 80.9 133 35.3
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.0e-13 80.9 133 35.3
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.0e-13 80.9 133 34.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.0e-13 80.9 133 33.8
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.3e-13 80.5 146 33.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.3e-13 80.5 117 38.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-13 80.5 114 39.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-13 80.5 114 38.6
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.3e-13 80.5 114 38.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.3e-13 80.5 114 38.6
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.7e-13 80.1 142 33.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.7e-13 80.1 114 39.5
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.2e-13 79.7 142 33.8
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.2e-13 79.7 114 38.6
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.2e-13 79.7 114 38.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.2e-13 79.7 114 39.5
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.2e-13 79.7 114 38.6
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.2e-13 79.7 133 33.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.9e-13 79.3 150 33.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.9e-13 79.3 114 38.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.9e-13 79.3 114 38.6
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.9e-13 79.3 114 38.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.9e-13 79.3 114 38.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.8e-13 79.0 133 33.8
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.8e-13 79.0 114 38.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.8e-13 79.0 114 38.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.0e-13 78.6 147 36.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.0e-13 78.6 114 38.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 6.5e-13 78.2 114 38.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.5e-13 78.2 114 37.7
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.5e-13 77.8 114 37.7
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.5e-13 77.8 114 37.7
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-12 77.4 114 37.7
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.1e-12 77.4 115 37.4
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.1e-12 77.4 114 37.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.5e-12 77.0 133 33.8
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.5e-12 77.0 114 38.6
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.9e-12 76.6 114 36.8
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.5e-12 76.3 133 33.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.5e-12 76.3 114 37.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 3.2e-12 75.9 147 32.7
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.6e-11 73.6 114 36.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.7e-11 72.8 52 63.5
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.7e-11 72.8 114 35.1
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.6e-11 72.4 114 36.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.6e-11 72.4 146 32.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 4.0e-10 68.9 44 68.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 4.0e-10 68.9 33 87.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 5.2e-10 68.6 114 31.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.4e-09 65.9 102 40.2
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 7.5e-09 64.7 61 54.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 9.8e-09 64.3 48 54.2
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.8e-09 64.3 114 33.3
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.7e-08 63.5 114 33.3
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.7e-08 62.4 29 86.2
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.9e-08 62.0 29 82.8
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.9e-08 62.0 29 82.8
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 9.2e-07 57.8 111 32.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.6e-06 57.0 115 35.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.5e-06 55.5 102 34.3


User provided reference genes

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