Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 3.8e-123 444.9 230 100.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.5e-103 379.8 230 86.1
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 6.3e-102 374.4 230 82.6
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 3.4e-100 368.6 230 80.0
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 1.3e-99 366.7 230 80.9
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.7e-99 366.3 230 80.4
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.9e-99 365.5 230 80.9
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.9e-99 365.5 230 80.9
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 6.5e-99 364.4 230 80.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.5e-99 364.0 230 80.4
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 3.2e-98 362.1 230 80.9
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.2e-98 361.7 230 78.3
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 5.5e-98 361.3 230 80.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 9.4e-98 360.5 230 78.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.6e-97 359.8 230 78.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.6e-97 359.8 230 80.4
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.1e-97 359.4 230 80.9
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.6e-97 358.6 230 80.0
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 6.1e-97 357.8 254 75.2
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 7.9e-97 357.5 230 77.8
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 3.0e-96 355.5 230 80.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.1e-96 354.8 230 77.0
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.7e-94 348.6 230 75.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.4e-93 345.9 230 76.1
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 3.1e-93 345.5 230 77.0
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 3.1e-93 345.5 231 76.2
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.5e-92 343.2 230 75.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 2.0e-92 342.8 229 76.9
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-92 342.8 230 76.1
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 3.5e-92 342.0 230 76.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 4.5e-92 341.7 230 76.1
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.7e-92 340.9 230 76.1
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.0e-91 340.5 239 72.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.0e-91 340.5 230 74.3
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 76.5
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 75.7
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 74.8
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 3.8e-91 338.6 230 74.3
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 75.7
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 75.7
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 74.3
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.5e-90 335.9 231 75.3
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 3.2e-90 335.5 232 75.4
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 4.2e-90 335.1 230 73.0
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 5.5e-90 334.7 231 74.9
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 73.9
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 74.3
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 74.3
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.2e-89 333.6 230 72.6
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.6e-89 333.2 230 74.8
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.0e-89 330.9 230 73.5
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.4e-88 330.1 230 73.5
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.0e-88 328.9 250 70.0
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 74.8
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 73.5
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.1e-87 327.0 220 75.0
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 2.0e-87 326.2 230 71.7
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 9.7e-87 323.9 230 71.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.3e-86 323.6 230 71.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 2.8e-86 322.4 230 72.2
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 3.7e-86 322.0 230 72.2
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 8.2e-86 320.9 220 73.2
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 70.9
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 4.1e-85 318.5 230 71.7
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.6e-84 315.8 230 70.0
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 3.5e-84 315.5 232 69.4
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 4.5e-84 315.1 232 71.1
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.5e-84 315.1 252 67.1
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.0e-83 313.9 232 70.7
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.0e-83 313.9 230 69.6
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.0e-83 313.9 318 58.2
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 68.7
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 70.4
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 67.8
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 2.2e-83 312.8 230 69.1
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-83 312.8 230 70.0
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.2e-83 312.8 232 71.6
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 71.7
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 3.8e-83 312.0 231 70.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 5.0e-83 311.6 230 69.1
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 6.5e-83 311.2 230 68.3
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 6.5e-83 311.2 230 68.7
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 68.3
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 68.3
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.5e-82 309.3 230 68.7
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.5e-82 309.3 230 68.7
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 2.5e-82 309.3 231 70.6
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.2e-82 308.9 307 59.0
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 3.2e-82 308.9 231 69.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 8.0e-81 304.3 263 62.0
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 68.3
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 67.4
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 68.7
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 2.3e-80 302.8 232 69.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 8.8e-80 300.8 230 67.0
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 69.1
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 66.1
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 7.5e-79 297.7 230 67.4
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 3.7e-78 295.4 230 66.5
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.1e-77 293.9 361 50.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 3.1e-77 292.4 231 67.5
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 63.5
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.9
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 7.2e-74 281.2 220 66.4
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.6e-73 278.9 236 63.1
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.0e-71 273.1 181 77.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.7e-68 262.7 199 65.3
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 4.5e-68 261.9 214 60.7
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 5.5e-66 255.0 230 60.0
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.6e-63 246.1 179 69.8
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.3e-62 243.8 166 73.5
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.8e-60 234.6 164 72.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.0e-59 234.2 164 72.0
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.3e-59 233.8 230 52.6
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 4.0e-56 222.2 231 54.1
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 5.2e-56 221.9 138 82.6
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 1.4e-53 213.8 229 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.4e-53 213.8 232 52.2
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.9e-53 213.4 164 68.3
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.2e-52 210.7 282 46.8
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.0e-52 209.9 141 75.9
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.3e-50 202.2 149 69.8
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.6e-47 193.0 237 46.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 7.5e-47 191.4 138 67.4
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 7.5e-47 191.4 117 83.8
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 6.0e-44 181.8 176 54.5
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.1e-42 177.6 241 46.1
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.5e-42 176.4 139 65.5
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 9.5e-42 174.5 110 79.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.1e-40 171.0 248 44.4
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.0e-40 169.1 139 60.4
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.2e-38 163.3 102 83.3
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 6.4e-38 161.8 266 41.7
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.3e-35 153.3 118 66.9
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.9e-35 152.5 218 45.4
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.5e-34 149.8 154 53.9
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.1e-32 144.4 292 36.6
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.2e-29 132.9 96 70.8
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-24 117.9 119 55.5
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 3.4e-23 112.8 78 70.5
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.4e-23 112.8 79 67.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.9e-19 99.4 106 54.7
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 9.6e-18 94.7 67 67.2
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 1.4e-16 90.9 71 54.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.4e-16 90.1 65 66.2
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 2.4e-16 90.1 80 63.8
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.6e-15 86.7 63 61.9
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 9.9e-15 84.7 54 79.6
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.3e-14 84.3 83 53.0
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 4.9e-14 82.4 160 39.4
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 2.7e-12 76.6 112 42.9
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.0e-11 74.7 58 60.3
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 6.7e-11 72.0 48 75.0
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 6.7e-11 72.0 93 44.1
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 2.5e-10 70.1 71 52.1
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.6e-09 67.4 38 78.9
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 2.4e-08 63.5 41 73.2
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 5.3e-08 62.4 40 72.5
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 6.4e-06 55.5 74 45.9


User provided reference genes

Program Settings