Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023029 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 2.2e-45 185.3 93 100.0
CSS0048061 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 3.7e-29 131.3 76 86.8
CSS0006591 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 1.1e-28 129.8 76 85.5
vmacro16190 Vaccinium macrocarpon HOM05D000341 ORTHO05D001197 3.6e-16 88.2 79 62.0
CSS0009346 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D001197 6.8e-15 84.0 90 52.2
Rhsim12G0109400 Rhododendron simsii HOM05D000341 ORTHO05D001197 2.6e-14 82.0 78 61.5
CiPaw.05G181100 Carya illinoinensis HOM05D000341 ORTHO05D001197 2.9e-13 78.6 92 51.1
GSVIVG01000538001 Vitis vinifera HOM05D000341 ORTHO05D001197 8.4e-13 77.0 84 52.4
Oeu038633.1 Olea europaea HOM05D000341 ORTHO05D001197 4.2e-12 74.7 78 50.0
Thecc.02G261700 Theobroma cacao HOM05D000341 ORTHO05D001197 7.1e-12 73.9 76 53.9
Manes.12G022000 Manihot esculenta HOM05D000341 ORTHO05D001197 9.3e-12 73.6 82 51.2
CARHR026510 Cardamine hirsuta HOM05D000341 ORTHO05D001197 3.5e-11 71.6 89 43.8
Gohir.A01G158800 Gossypium hirsutum HOM05D000341 ORTHO05D001197 7.8e-11 70.5 79 51.9
Gohir.D01G151600 Gossypium hirsutum HOM05D000341 ORTHO05D001197 7.8e-11 70.5 79 51.9
Cpa.g.sc33.34 Carica papaya HOM05D000341 ORTHO05D001197 1.0e-10 70.1 80 52.5
BraA08t34613Z Brassica rapa HOM05D000341 ORTHO05D001197 2.3e-10 68.9 81 45.7
A08p26650 Brassica napus HOM05D000341 ORTHO05D001197 3.9e-10 68.2 81 44.4
Sp1g23210 Schrenkiella parvula HOM05D000341 ORTHO05D001197 3.9e-10 68.2 78 44.9
Duzib268G0199 Durio zibethinus HOM05D000341 ORTHO05D001197 5.1e-10 67.8 84 48.8
Thhalv10009051m.g Eutrema salsugineum HOM05D000341 ORTHO05D001197 5.1e-10 67.8 78 47.4
Gorai.002G187900 Gossypium raimondii HOM05D000341 ORTHO05D001197 5.1e-10 67.8 75 52.0
Prupe.1G246100 Prunus persica HOM05D000341 ORTHO05D001197 1.1e-09 66.6 79 49.4
BcaB03g12053 Brassica carinata HOM05D000341 ORTHO05D001197 1.9e-09 65.9 86 40.7
C03p73350 Brassica napus HOM05D000341 ORTHO05D001197 1.9e-09 65.9 76 47.4
BolC3t19632H Brassica oleracea HOM05D000341 ORTHO05D001197 1.9e-09 65.9 76 47.4
QL03p057679 Quercus lobata HOM05D000341 ORTHO05D001197 1.9e-09 65.9 80 51.2
ClCG05G025820 Citrullus lanatus HOM05D000341 ORTHO05D001197 2.5e-09 65.5 84 46.4
CANSAT01G3068 Cannabis sativa HOM05D000341 ORTHO05D001197 4.3e-09 64.7 82 50.0
Lj6g0007345 Lotus japonicus HOM05D000341 ORTHO05D001197 4.3e-09 64.7 82 47.6
Carub.0001s2553 Capsella rubella HOM05D000341 ORTHO05D001197 5.6e-09 64.3 79 43.0
Ciclev10032987m.g Citrus clementina HOM05D000341 ORTHO05D001197 5.6e-09 64.3 89 46.1
Dinv14729 Davidia involucrata HOM05D000341 ORTHO05D001197 5.6e-09 64.3 82 52.4
Hma1.2p1_0079F.1_g041030 Hydrangea macrophylla HOM05D000341 ORTHO05D001197 5.6e-09 64.3 73 54.8
Oeu001703.1 Olea europaea HOM05D000341 ORTHO05D001197 5.6e-09 64.3 78 44.9
Potri.010G047100 Populus trichocarpa HOM05D000341 ORTHO05D001197 5.6e-09 64.3 77 50.6
Atru.chr11.2150 Acer truncatum HOM05D000341 ORTHO05D001197 9.6e-09 63.5 95 43.2
FvH4_4g25700 Fragaria vesca HOM05D000341 ORTHO05D001197 9.6e-09 63.5 79 48.1
Glyma.18G013800 Glycine max HOM05D000341 ORTHO05D001197 1.3e-08 63.2 83 50.6
AL1G40350 Arabidopsis lyrata HOM05D000341 ORTHO05D001197 1.6e-08 62.8 75 46.7
Manes.13G023100 Manihot esculenta HOM05D000341 ORTHO05D001197 1.6e-08 62.8 87 41.4
Sc04g0009570 Simmondsia chinensis HOM05D000341 ORTHO05D001197 1.6e-08 62.8 76 46.1
FAN17G2998 Fragaria x ananassa HOM05D000341 ORTHO05D001197 2.8e-08 62.0 79 46.8
AT1G24580 Arabidopsis thaliana HOM05D000341 ORTHO05D001197 3.6e-08 61.6 74 44.6
AT1G67856 Arabidopsis thaliana HOM05D000341 ORTHO05D001197 3.6e-08 61.6 87 39.1
PSO063G4244 Papaver somniferum HOM05D000341 ORTHO05D001197 3.6e-08 61.6 80 46.2
RcHm_v2.0_Chr4g0433131 Rosa chinensis HOM05D000341 ORTHO05D001197 3.6e-08 61.6 80 47.5
Medtr3g086630 Medicago truncatula HOM05D000341 ORTHO05D001197 4.8e-08 61.2 88 46.6
MELO3C011942.2 Cucumis melo HOM05D000341 ORTHO05D001197 6.2e-08 60.8 76 46.1
FAN07G2103 Fragaria x ananassa HOM05D000341 ORTHO05D001197 6.2e-08 60.8 78 47.4
FAN22G1948 Fragaria x ananassa HOM05D000341 ORTHO05D001197 6.2e-08 60.8 79 45.6
MD13G1099900 Malus domestica HOM05D000341 ORTHO05D001197 6.2e-08 60.8 77 46.8
Duzib251G0186 Durio zibethinus HOM05D000341 ORTHO05D001197 8.1e-08 60.5 83 47.0
PSO754G0016 Papaver somniferum HOM05D000341 ORTHO05D001197 8.1e-08 60.5 89 42.7
MSTRG.7944 Avicennia marina HOM05D000341 ORTHO05D001197 1.4e-07 59.7 84 40.5
Phvul.001G255200 Phaseolus vulgaris HOM05D000341 ORTHO05D001197 1.4e-07 59.7 76 48.7
CsaV3_5G031030 Cucumis sativus L. HOM05D000341 ORTHO05D001197 1.8e-07 59.3 76 44.7
THA.LOC104807815 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 1.8e-07 59.3 80 41.2
Sc14g0008770 Simmondsia chinensis HOM05D000341 ORTHO05D001197 2.4e-07 58.9 78 42.3
Aa31LG7G9470 Aethionema arabicum HOM05D000341 ORTHO05D001197 3.1e-07 58.5 73 46.6
THA.LOC104825557 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 3.1e-07 58.5 76 47.4
TPR.G30532 Trifolium pratense HOM05D000341 ORTHO05D001197 3.1e-07 58.5 87 43.7
DCAR_026508 Daucus carota HOM05D000341 ORTHO05D001197 9.0e-07 57.0 76 40.8
MD16G1100900 Malus domestica HOM05D000341 ORTHO05D001197 1.2e-06 56.6 78 44.9
ATR0824G038 Amborella trichopoda HOM05D000341 ORTHO05D001197 4.4e-06 54.7 89 37.1
TWI36G0417 Tripterygium wilfordii HOM05D000341 ORTHO05D001197 5.8e-06 54.3 75 45.3
AL2G26610 Arabidopsis lyrata HOM05D000341 ORTHO05D001197 7.6e-06 53.9 88 35.2


User provided reference genes

Program Settings